SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17369

Length: 1801 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17369

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	fructokinase 3 [Solanum lycopersicum]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	ribokinase activity	GO:0004747	Molecular Function	0.0	-
Sma3	D-ribose metabolic process	GO:0006014	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate/purine kinase	IPR011611	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Ribokinase	IPR002139	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G66430.1	pfkB-like carbohydrate kinase family protein chr1:24778400-24780393 FORWARD LENGTH=384	69%
RefSeq	Arabidopsis thaliana	NP_564875.2	fructokinase [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002305200.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWX9

Fln msg:

Fln protein: MAMAAAVSASSASAFNRAGSSGFLEAKTINLSTSQFPSKGLYRSSFLSRVLEIKAQHKRNNFERPASGLIVKALSEDDNNGKPSEVSPLVVCFGELLIDFVPTVNGVSLADAPAFKKAPGGAPANVAVGIARLGGSSAFLGKVGEDEFGRMLVDILKENNVEHKGMRFDPDARTALAFVTLKADGEREFMFFRNPSADMLLTEAELDVDLIQQAKIFHYGSISLITDPCKSAHLAAMRIARDTGSLLSYDPNLRLPLWPSASEAREGILSIWDKADLIKVSEEEVGFLTGGADPFDDTVVRNLFHPNLKLLLVTEGQQGCRYYTKDFSGRVKGLAVEAVDTTGAGDAFVSGILSQLAKDFTLLQREEELREALKFANACGAITVTERGAIPALPTREAVLAALTKVLA*

Protein Length: 410

Fln nts: ATGGGGGCGTTCACCCCTTGCATCTCCGGCGAGGTAATAGTGAATCGCGGACGCACGAGGCAAAAACCGGTGCAGGGAGCGAATCCGCGAAGGTCTGAGGGGGCAATTGGCCACATCGATTGAGAATAAATACTGCCCCCAACATACTACACTTTTCAGACAATTCCCAGAGTTGTACTTGCCTGTTGCCAACTGTGTTTTTGGAATGAACAGAAGGATTTAGCCTAGACTGCCATATTTTTCGTCAAATTCCGTTCTATCCTACTACTACCACCGCCGACCAGATTTCATAAAGATCCGATCAGAAGAGA_-_ATGGCAATGGCTGCTGCAGTTTCTGCATCATCAGCTTCCGCATTCAATCGGGCCGGGTCCTCTGGATTTCTGGAGGCCAAGACTATCAATTTGTCAACTTCACAATTTCCGTCTAAGGGTCTTTACAGATCGTCGTTTCTGAGCAGAGTGCTGGAAATCAAGGCTCAACACAAAAGGAATAACTTCGAACGGCCGGCTTCAGGTTTAATAGTGAAAGCATTGAGTGAAGACGACAATAATGGGAAACCATCTGAGGTGTCCCCGCTAGTGGTGTGCTTTGGGGAATTGCTGATCGATTTTGTCCCAACGGTCAATGGAGTCTCATTGGCTGATGCTCCTGCATTCAAGAAAGCTCCAGGAGGAGCCCCTGCGAATGTTGCCGTTGGTATAGCAAGGCTCGGAGGTTCATCCGCATTTCTAGGGAAGGTTGGCGAAGATGAATTTGGGCGCATGCTTGTGGATATTCTGAAAGAAAATAATGTGGAGCACAAAGGGATGCGCTTTGATCCTGATGCTCGAACTGCTTTGGCTTTTGTCACATTGAAAGCCGATGGTGAACGAGAGTTTATGTTTTTCCGGAATCCCAGTGCTGATATGCTACTAACTGAAGCCGAGCTTGACGTGGACTTGATCCAACAGGCTAAAATTTTCCATTATGGATCAATTAGTCTGATCACAGACCCCTGTAAGTCTGCCCATTTGGCTGCCATGAGAATCGCTAGAGACACGGGCAGTTTACTGTCTTATGATCCCAATCTCAGATTGCCATTATGGCCATCAGCGAGCGAAGCTCGGGAGGGTATTTTAAGCATATGGGATAAAGCAGATTTAATTAAGGTTAGTGAAGAGGAAGTAGGATTTTTAACAGGAGGTGCAGATCCATTCGACGACACTGTTGTAAGAAACCTTTTCCATCCAAACCTCAAATTGCTTCTCGTGACTGAAGGCCAGCAAGGATGTAGATATTACACCAAGGATTTTAGCGGAAGAGTGAAAGGCCTGGCAGTGGAAGCTGTAGACACCACTGGTGCTGGAGATGCGTTTGTGAGTGGAATTCTTAGTCAATTGGCTAAGGACTTCACTTTATTGCAGAGAGAAGAGGAACTGAGAGAGGCATTGAAGTTTGCAAATGCCTGTGGTGCAATTACGGTTACTGAGAGGGGGGCAATCCCTGCTCTTCCCACGCGAGAAGCAGTCCTAGCAGCTCTGACAAAAGTTCTTGCCTAA___GCGTTTTATCTACATTTCTTTTTTGCATAGTTGGCAGCCTATAAAATACCCGTGGATGGTCCTGTGGATGGCGTTAGAGACGAGCTTGTGACACTCCCTATTGTAAAATTGGCTGCCTGTTTTGTGATCTTAGATATGAAACTTAGCAAATAAGCACTTTAACATTGTATTAAGGCGAACTCTTTTTTATTTTTGCCTATTCGGGTGTCAAGAAATTTTGAGAAATTTAATCTATATATCTACTTCCATTCCCAGTCGTCGTT

Fln Alignment:

Contig17369___GFLEAKTINLSTSQFPSKGLYRSSFLSRVLEIKAQHKRNNFERPASGLIVKALSEDDNNGKPSEVSPLVVCFGELLIDFVPTVNGVSLXXXXXXXXXXXXXXXXXXXXXXRLGGSSAFLGKVGEDEFGRMLVDILKENNVEHKGMRFDPDARTALAFVTLKADGEREFMFFRNPSADMLLTEAELDVDLIQQAKIFHYGSISLITDPCKSAHLAAMRIARDTGSLLSYDPNLRLPLWPSASEAREGILSIWDKADLIKVSEEEVGFLTGGADPFDDTVVRNLFHPNLKLLLVTEGQQGCRYYTKDFSGRVKGLAVEAVDTTGAGDAFVSGILSQLAKDFTXXXXXXXXXXXXKFANACGAITVTERGAIPALPTRE
A9NWX9_______________GFLEAKAINLSTSQFSSKGLYRSSFLSRMPEIKSQHRRNAFKRPAPGLIPKALSESHDNGKPSEVSPLVVCFGEMLIDFVPTVSGVSLAEAPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGDDEFGYMLADIMKENNVEHRGMRFDPVARTALAFVTLKADGEREFMFFRNPSADMLLTESELEVDLIQQAKIFHYGSVSLITEPCRSAHLAAMRIAKDTGSFLSYDPNLRLPLWSSASAAREGMLSIWDEADVIKVSDEEVEFLTEGADPYDDTVARNLFHPNLKLLLVTEGDQGCRYYTKDFSGRVNGVAVQAVDTTGAGDAFVSGILSELAKDFNLLQEEKGLREALKFANACGAITVTERGAIPALPTRE

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
816		80		20	0.995493
915	80		20		0.995493
933		20		80	0.995493
1035		87		12	0.992554
1500	87		12		0.992554
1512		12	87		0.992554
1789		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain