SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17355

Length: 1331 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17355

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 5A n=3 Tax=Picea RepID=Q3ZDK6_PICAB	-	-	99%
FL-Next	tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa).	-	-	99%
Sma3	Eukaryotic translation initiation factor 5A	-	-	-

Source	Gene names
Sma3	eIF5A;

Source	GOs	Term	Type	e value	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	0.0	-
Sma3	translational initiation	GO:0006413	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor IF5A	IPR001884	-	-
Sma3	Translation elongation factor, IF5A, hypusine site	IPR019769	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation protein SH3-like, subgroup	IPR014722	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G13950.1	EIF-5A, ELF5A-1, ATELF5A-1, EIF5A eukaryotic elongation factor 5A-1 chr1:4773631-4774668 FORWARD LENGTH=158	84%
RefSeq	Arabidopsis thaliana	NP_172848.1	translation initiation factor eIF-5A [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002312268.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q3ZDK6

Fln msg:

Fln protein: MSDDDHQFESKADAGASKTFPQQAGTIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGQTKDDLKLPTDEQLLAQIKAGFDEGKDLVVTVMSAMGEEQICSLKDIGPK*

Protein Length: 161

Fln nts: GAAGTTATGGAGATTTCTAGGTCCAATTGAGTGGAAAATGTTATAAAAATGAAAACAAATAAGGCGAGGGTTATCCTTTTAGCAGCATCTCCAATAAAGAGGTAAAATGGAATAAAATCTTATCTTTTTTATGGGGGTGGTGGATTAGAATCTTTTTAAAGGGGGCTTCGTTTTGACGCTACCATTACCTATAAAAATTAAGAACACCACCACCGATAGCTGTAATCTATCCGCCCACGTGTTCAGATCCAGTTGGCTGCCTAGTCCCTGAGTTCGAACCTGCGAGGGTTTGGAAGGTAGGGTTTGAAGATTCCAGCGCAATTGCTTAATTGTAAAGGGCAGAAGAGTCTGTATCTTTGTTCGTGGTGTGGCAGTTGGCGTCTGGTCTGGCCTGGTTTTGGCTGAGAATTGGGTGTGTTGTTATTGTCAAGAGGAAGGTGAACA_-_ATGTCGGACGATGATCACCAGTTCGAGTCCAAGGCCGATGCAGGAGCCTCCAAAACATTCCCTCAGCAGGCCGGTACCATCCGAAAGAACGGTTACATCGTCATCAAGGCCAGGCCCTGCAAGGTGGTTGAAGTATCTACTTCAAAGACTGGAAAGCATGGCCATGCTAAGTGCCACTTTGTAGGAATTGACATTTTCAGTGGTAAAAAACTGGAAGATATTGTGCCATCTTCACACAACTGCGACGTCCCTCATGTTACTCGTACTGATTATCAGCTAATCGATATTTCTGAGGATGGTTTTGTTAGCCTGCTGACCGAATCTGGGCAGACCAAGGATGATCTCAAGCTGCCTACTGATGAGCAGCTGTTGGCCCAGATCAAGGCTGGATTTGACGAGGGGAAAGACCTTGTTGTAACTGTTATGTCTGCAATGGGAGAGGAGCAGATTTGTTCCCTGAAAGATATTGGTCCAAAATAA___TAATATACTGATATGTCTGGACTGCTGAATCTTGGGCAACTCTCCACCCGTTGATTTCTTTTCTTTTAGAATATCAAATATTTCTAGAAAATATATCTATATCCTTGATGCACATATGTTTTAGAGGCAGGTATAGTGATATCCATGCCATTGTTTACTAAGCAATCTGAAATAATTCTGTGATTCTCTGTAGCATTTGCCATCATCTTTATATGTGAAGACAGGCAAATTAAAACCTTCTATTTTAATGTACCTGTGCGGGTATCCTTGGGATGCCGTCTTATTATTGATTATTGGTTTGAAGAATTATATTTTACCAATTGAATTACTATTACAGTGATTATGTTTCTCTGGTTGCGGTTTCTTCTTGTCTTTAATACAACATGAATCGGATTATTAGTGTAGTA

Fln Alignment:

Contig17355___MSDDDHQFESKADAGASKTFPQQAGTIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGQTKDDLKLPTDEQLLAQIKAGFDEGKDLVVTVMSAMGEEQICSLKDIGPK
Q3ZDK6_______________MSDDDHQFESKADAGASKTFPQQAGTIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGQTKDDLKLPTDDQLLAQIKAGFDEGKDLVVTVMSAMGEEQICSLKDIGPK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
362		66	33		0.997452
364			33	66	0.997452
640		11		88	0.923564
685			28	71	1.0
686	28		71		1.0
690		66		33	1.0
691			60	40	1.0
768			16	83	0.994512
771			83	16	0.994512
897	0			98	0.999995
925			0	98	0.993606
988		0		95	1.0
1043		0		97	0.956798
1075			0	96	1.0
1262	0	2		95	0.999856
1276	4			95	0.994598

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain