SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17342

Length: 1736 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17342

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetyl-CoA carboxylase BCCP subunit n=1 Tax=Jatropha curcas RepID=F2WMV5_9ROSI	-	-	2.00386e-43	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	acetyl-CoA carboxylase complex	GO:0009317	Cellular Component	-
Sma3	acetyl-CoA carboxylase activity	GO:0003989	Molecular Function	-
Sma3	biotin binding	GO:0009374	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acetyl-CoA biotin carboxyl carrier	IPR001249	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16390.1	CAC1, CAC1A, BCCP, BCCP1 chloroplastic acetylcoenzyme A carboxylase 1 chr5:5361098-5363020 REVERSE LENGTH=280	2.99878e-43	48%
RefSeq	Arabidopsis thaliana	NP_197143.1	biotin carboxyl carrier protein of acetyl-CoA carboxylase 1 [Arabidopsis thaliana]	3.9937e-43	48%
RefSeq	Populus trichocarpa	XP_002325474.1	predicted protein [Populus trichocarpa]	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0L3

Fln msg:

Fln protein: MATVPTASATAPMLVEANSGNSSGVLSSPASQQHHVRVSNARARSRGSVLASSFSGTHLDRPFAGQFERYRGSRSALWKSTVNEQVAVHGSSNAAAIPAAQSLEVKAAGDNGDKPAEESSASSSAPSTMTGSAISAFMSEVADLIKLVDSRDIMELQLKQQDCEILIRKKEALPQPPAPSPPVMVHSLYPPAPAPPPSPAVATDRPTYDLVPAGPSTPTQPQAPAKPDQSGQASFKCPMAGTFYRSPGPGQPHFVKVGDKVQKGQVICIVEAMKLMNEIEADRSGTIVEILVEDGKPVAIDMPLFVIKT*

Protein Length: 311

Fln nts: ATGGGCATAGACGGCAGTTGTCGTAAAATACCGACGTCGATAAGTCCGTCTGGCAAATAACAAACGGACTGATAAATTTACTGTCCTGTTCAGCACCAAGCGGCATTCCTTCGCTCTGGATGTGTGCCTGATCACAGGTTCGAGTCTCAACAAACTTGAAGAATCTTGAATTCCTGCAGAACACTC_-_ATGGCGACTGTTCCCACAGCGTCTGCGACTGCGCCTATGTTAGTAGAAGCAAACAGCGGCAATAGCAGTGGAGTATTAAGTTCTCCGGCCAGTCAGCAGCATCACGTTAGGGTTTCAAATGCCAGGGCCCGCTCACGGGGTTCGGTCTTGGCTTCGAGCTTCTCGGGAACTCACCTCGATCGGCCTTTTGCTGGACAGTTCGAGCGATATCGGGGTTCTCGGTCAGCTTTGTGGAAGTCAACTGTGAACGAGCAGGTTGCAGTCCATGGATCCTCTAATGCTGCAGCAATTCCTGCTGCTCAAAGTTTGGAAGTCAAAGCGGCTGGGGACAATGGGGACAAGCCTGCTGAGGAGTCTTCAGCTTCATCTTCAGCGCCTTCCACAATGACGGGTTCGGCTATTTCTGCATTTATGAGTGAAGTCGCTGATTTGATCAAGCTTGTGGATTCTCGGGATATTATGGAATTGCAGCTGAAACAACAGGATTGTGAAATTCTAATTAGGAAAAAGGAGGCATTGCCTCAGCCTCCTGCTCCATCTCCACCTGTAATGGTACATTCCCTTTACCCGCCAGCCCCAGCTCCACCACCATCACCAGCTGTTGCAACTGATCGACCGACATATGACCTTGTTCCTGCTGGTCCTTCGACTCCTACCCAACCTCAGGCTCCTGCAAAGCCAGATCAATCAGGGCAAGCAAGTTTTAAATGCCCTATGGCAGGAACTTTCTACCGCAGTCCTGGCCCTGGTCAACCGCATTTTGTTAAGGTTGGAGATAAAGTCCAGAAAGGGCAGGTGATTTGCATTGTTGAAGCCATGAAACTGATGAATGAAATTGAGGCTGACCGATCAGGAACAATTGTTGAAATTCTTGTTGAGGACGGCAAGCCAGTTGCTATTGACATGCCTCTCTTCGTGATCAAGACATGA___ATCTGGAGACTTTGAACATCAAAGTTGCAGGTAGACAAAATGTCATGTGGATATTTGGTTTGCTCCTTTCTTATAAAGGGGTTATAAGGTGCAGCATGCCTGGATAATGTGTTTTACACATTGGATTAGTTGGTTTGATATATAACATGGGAAGCTGTGTACCGGATTCTTTTTGTATGGTTTTGCATCTACAATTTTCAGCGCCCACTCTGAAATTATAGTAAAGGCCTACAAATTGAAAGAACTCTTTTTGCTTTACTTTAGGGACGTAATAGTTCAATTGATTTTTATTTTTCCCCATATTAGGGTTGTGTCTGTAGACAAGAAAGTAGGTCATATATTTTGATTTCTCAATTGCCTGTACTTTGGTCTTAGTTTTTTCTTTCCCAAAGACACGGAATTCTTTTAGTTAAGTTGTTCTATTTATTTTAGCAATTTTTTTCTGACAGGAGCAATAAACGTGCGAGTTTTATGCATCTTGAGAAGTTGCTGCTATTTACTAGCGTAGTGGTTTTGTTGAATTTTGTTTTTTTTACTGCTTGCATTGAAACGTACGTGCCGAGGAAAGTCTTGTTCATGAATAGAAAGTAGAGATAAAGATCCAGGGAGTATTATCATGG

Fln Alignment:

Contig17342___MATVPTASATAPMLVEANSGNSSGVLSSPASQQHHVRVSNARARSRGSVLASSFSGTHLDRPFAGQFERYRGSRSALWKSTVNEQVAVHGSSNAAAIPAAQSLEVKAAGDNGDKXXXXXXXXXXXXXTMTGSAISAFMSEVADLIKLVDSRDIMELQLKQQDCEILIRKKEALXXXXXXXXXVMVHSLYXXXXXXXXXXXXXTDRPTYDLVPAGPSTPTQPQAPAKPDQSGQASFKCPMAGTFYRSPGPGQPHFXXXXXXXXXXXXICIVEAMKLMNEIEADRSGTIVEILVEDGKPVAIDMPLFVIK
A9P0L3_______________MATVPTASATAPLLAEANSGNSSGVLSSPVSQQHQVRVSNPRARSRGSVLASSFSGSRLDRPFAGQLEGLRGSRPALWKSPVNEQVAVHGFSNAAAVPAAESLEVKSAEDNGDKLAEESASSSSSPSIMAGSAISAFMSEVTDLIKLVDSRDIMELQLKQQDYEILIRKKEALPPPPSPSPPVMVHSLYPPAPAPLPSPAVAPNRPTYDLVPAGPSTPTQPEAPAKPEQSGHPSFKCPMAGTFYRSPGPGQPSFVKVGDKVQKGQVICIVEAMKLMNEIEADRSGTIVEILVEDGKPVAVDMPLFVIK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1287		1		77	1.0
1491	90			10	1.0
1641	12			87	0.992554
1643			12	87	0.992554
1644			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain