SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17340

Length: 2937 nt

UniGene Fasta

>sp_v3.0_unigene17340
TTGTTGGCCGGGTGCGAAACTCCTGGAAAACTTCGAGAAAAATTAAGAAAAGTCGGAACTTTCTGGAACTGGCGAAACAACTGAAGGTCTCGTCAAGAACTATCCAGAAACCCTAACATTATCCCAACGCTTCTAGAGACATCCAAGCAACCCTATCATTTAAATTGGCTGTAAGGGTTTCGCATCCACGCATGAAGATTCAAAGAAGCCATTTCTGTGCACGTTGATACGCTCTGTTAAAGCTGTGTGCGCGCTAAGGATTTTGATATCTGTTGAGTTTCTGGATATCTGATCCAAAGAATTTTGTGTCGGGTCTAGGTTTAGGCTTTGGATTCCTATTGTTGGTTATTGGGTTCACTGTTTTAGTTGATTGGAATATCAATGGCGGATGTCAGCATGGAGACCGGCGACGTTGAGACTTTTGCTTTCCAGGCTGAAATTAATCAGTTACTTAGCCTCATTATCAACACTTTTTACAGTAACAAGGAGATTTTCCTCAGAGAGCTCATCAGCAATTCATCTGATGCTCTGGACAAGATTCGGTTCGAAGGGCTAACGGATAAGAGCAAGTTGGATTCTCAGCCGGAGCTTTTCATTCGGATTGTTCCCGACAAGGCAAACAAGTGCCTCACCATTATTGACAGTGGAGTAGGCATGACCAAAGCCGATTTGGTGAACAATTTGGGAACAATTGCAAGATCGGGGACAAAAGAGTTCATGGAGGCTTTGCAAGCTGGGGCAGATGTGAGCATGATCGGTCAGTTCGGTGTTGGATTCTATTCAGCTTACCTCGTGGCAGAGAAAGTGATTGTTACCACCAAGCACAATGATGACGAACAATACATCTGGGAATCTCAGGCTGGGGGGTCGTTTACCGTCACAAGAGATGTGAACGGTGAGCCCCTGGGGAGAGGAACTAAAATCACCCTGTTTCTCAAGGAAGATCAGTTGGAGTACTTGGAGGAGAGGCGGCTGAAGGATCTGATCAAGAAGCATTCCGAGTTTATTAGCTACCCCATTTATTTGTGGACTGAGAAGACCACCGAGAAGGAGGTCAGTGACGACGAAGATGAGGCAGAGGAGAAGAAGGAAGATGAGGGGGATATCCAGGAAGTGGAGGAGGAAAAGGAGAAAGATAAGAAGAAAAAGAAGGTAAAGGAAGTGTCGCATGAATGGAGTCTCGTCAACAAGCAGAAGCCCATCTGGATGAGAAAGCCAGAGGAGATTACAAAGGAAGAGTATGCATCGTTCTATAAGAGTCTCACCAATGATTGGGAGGATCACTTGGCCGTGAAGCATTTCTCTGTAGAGGGTCAATTGGAGTTCAAGGCTGTTCTCTTTGTTCCGAAGAGGGCTCCATTCGATCTCTTTGACACAAAGAAGAAGCTCAACAATATTAAGCTTTATGTGAGAAGGGTTTTCATAATGGACAACTGTGAGGAGCTTATTCCCGAATACCTAGGGTTTGTCAAAGGTGTGGTGGACTCCGATGATCTGCCCCTGAATATCTCTCGGGAGATGCTGCAGCAGAACAAGATTCTGAAGGTGATCCGGAAGAATTTGGTGAAGAAATGTATTGAGATGTTCAACGAGATTGCCGAGAACAAAGAGGACTATGCCAAGTTCTACGAGGCCTTTTCGAAGAACTTAAAATTGGGAATACATGAGGACAGCCAGAACAGGGCTAAGCTTGCAGATTTGTTGAGATATCACTCGACAAAGAGCGGAGACGAGATGACGAGCCTCAAGGACTATGTGACCCGAATGAAAGAGGGGCAGAAGGACATCTATTATATTACCGGAGAGAGCAAGAAGGCGGTGGAGAATTCTCCGTTCTTGGAGAGACTGAAAAGGAAAGGATATGAAGTTCTTTTTATGGTGGATGCCATCGATGAGTATGCCATAGGGCAGCTCAAGGAGTACGACGGCAAGAAGCTTGTTTCTGCGACCAAAGAAGGGCTGAAGCTTGAGGAAACAGAGGAGGAAAAGAAGAAGAAGGAAGAGAAGAAAGCTGCCTTTGAGAACCTGTGCAAAGTGATGAAGGACATCTTGGGCGACAAGGTGGAGAAGGTAGTGGTGTCGGATCGCATTGTGGACTCTCCGTGCTGTCTGGTGACTGGCGAGTATGGATGGACGGCGAACATGGAGAGAATAATGAAGGCCCAGGCCTTGCGCGACAGCTCCATGTCGTCCTACATGTCCAGCAAGAAAACAATGGAAATCAATCCGGAGAACGCCATCATGGAGGAGCTGAGAAAGAGAGCCGAGGCGGACAAGCATGACAAATCGGTGAAGGATCTGGTGATGCTCTTGTATGAGACTGCACTGCTCACATCAGGATTCAGTCTGGAGGAGCCGAACACATTCGCTGCCAGGATACACAGGATGCTTAAGCTTGGGCTAAGCATCGAGGACGATGTCACCGCTGAGGTGGATGCAGACATGCCGCCTCTGGAAGATGATTCCTCCATCCAGGAGGAGAGCAAGATGGAGGAGGTAGACTAAGTAGCCTCTGGAAGATGATGCCTGCATCCAGTACTAGAGCAAGATGGAGGAGGGAGACTAAGTCTCTTGACTCCAGAAGCAAACGAATTCTGTGCTAGATTTCTGGAAATGCATAATTTGCGGGAGGGTTAACTTTTTGTAAGGTTTTCTTTGATTTTTAGTTTGGTAGTGGTTAACAGGTAGAGGTGTACATGTAGAAATTGGCGTTTACCTGCGCGCGTATTTTGCTGTATTTCGTATTTTAATATCCATTTCAAGAAATGAAACTTCTTGTTCCCTAAATCAATGGAGTAGATCAGTGATCTTTATTGGTGTTTAGATGATCATTTTATTAATAGGGCTAAAACAATAGTTAGGTGTCTAACATGTATGGTGTAAGTTAGTTTTTAACATGGGCTAACTGTTTTACAAGAAATATCTATCTCCAAATTC

Ace file of the UniGene sp_v3.0_unigene17340

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 90-1 n=9 Tax=rosids RepID=HS901_ARATH	-	-	82%
FL-Next	sp=Heat shock protein 83; Ipomoea nil (Japanese morning glory) (Pharbitis nil).	-	-	87%
Sma3	At5g52640/F6N7_13	-	-	-

Source	Gene names
Sma3	At5g52640;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	0.0	-
Sma3	Heat shock protein Hsp90	IPR001404	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52640.1	HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 heat shock protein 90.1 chr5:21352542-21355147 FORWARD LENGTH=705	88%
RefSeq	Arabidopsis thaliana	NP_200076.1	heat shock protein 81-1 [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002327494.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P51819

Fln msg:

Fln protein: MADVSMETGDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDSQPELFIRIVPDKANKCLTIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVNGEPLGRGTKITLFLKEDQLEYLEERRLKDLIKKHSEFISYPIYLWTEKTTEKEVSDDEDEAEEKKEDEGDIQEVEEEKEKDKKKKKVKEVSHEWSLVNKQKPIWMRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYEAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAIGQLKEYDGKKLVSATKEGLKLEETEEEKKKKEEKKAAFENLCKVMKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENAIMEELRKRAEADKHDKSVKDLVMLLYETALLTSGFSLEEPNTFAARIHRMLKLGLSIEDDVTAEVDADMPPLEDDSSIQEESKMEEVD*

Protein Length: 709

Fln nts: TTGTTGGCCGGGTGCGAAACTCCTGGAAAACTTCGAGAAAAATTAAGAAAAGTCGGAACTTTCTGGAACTGGCGAAACAACTGAAGGTCTCGTCAAGAACTATCCAGAAACCCTAACATTATCCCAACGCTTCTAGAGACATCCAAGCAACCCTATCATTTAAATTGGCTGTAAGGGTTTCGCATCCACGCATGAAGATTCAAAGAAGCCATTTCTGTGCACGTTGATACGCTCTGTTAAAGCTGTGTGCGCGCTAAGGATTTTGATATCTGTTGAGTTTCTGGATATCTGATCCAAAGAATTTTGTGTCGGGTCTAGGTTTAGGCTTTGGATTCCTATTGTTGGTTATTGGGTTCACTGTTTTAGTTGATTGGAATATCA_-_ATGGCGGATGTCAGCATGGAGACCGGCGACGTTGAGACTTTTGCTTTCCAGGCTGAAATTAATCAGTTACTTAGCCTCATTATCAACACTTTTTACAGTAACAAGGAGATTTTCCTCAGAGAGCTCATCAGCAATTCATCTGATGCTCTGGACAAGATTCGGTTCGAAGGGCTAACGGATAAGAGCAAGTTGGATTCTCAGCCGGAGCTTTTCATTCGGATTGTTCCCGACAAGGCAAACAAGTGCCTCACCATTATTGACAGTGGAGTAGGCATGACCAAAGCCGATTTGGTGAACAATTTGGGAACAATTGCAAGATCGGGGACAAAAGAGTTCATGGAGGCTTTGCAAGCTGGGGCAGATGTGAGCATGATCGGTCAGTTCGGTGTTGGATTCTATTCAGCTTACCTCGTGGCAGAGAAAGTGATTGTTACCACCAAGCACAATGATGACGAACAATACATCTGGGAATCTCAGGCTGGGGGGTCGTTTACCGTCACAAGAGATGTGAACGGTGAGCCCCTGGGGAGAGGAACTAAAATCACCCTGTTTCTCAAGGAAGATCAGTTGGAGTACTTGGAGGAGAGGCGGCTGAAGGATCTGATCAAGAAGCATTCCGAGTTTATTAGCTACCCCATTTATTTGTGGACTGAGAAGACCACCGAGAAGGAGGTCAGTGACGACGAAGATGAGGCAGAGGAGAAGAAGGAAGATGAGGGGGATATCCAGGAAGTGGAGGAGGAAAAGGAGAAAGATAAGAAGAAAAAGAAGGTAAAGGAAGTGTCGCATGAATGGAGTCTCGTCAACAAGCAGAAGCCCATCTGGATGAGAAAGCCAGAGGAGATTACAAAGGAAGAGTATGCATCGTTCTATAAGAGTCTCACCAATGATTGGGAGGATCACTTGGCCGTGAAGCATTTCTCTGTAGAGGGTCAATTGGAGTTCAAGGCTGTTCTCTTTGTTCCGAAGAGGGCTCCATTCGATCTCTTTGACACAAAGAAGAAGCTCAACAATATTAAGCTTTATGTGAGAAGGGTTTTCATAATGGACAACTGTGAGGAGCTTATTCCCGAATACCTAGGGTTTGTCAAAGGTGTGGTGGACTCCGATGATCTGCCCCTGAATATCTCTCGGGAGATGCTGCAGCAGAACAAGATTCTGAAGGTGATCCGGAAGAATTTGGTGAAGAAATGTATTGAGATGTTCAACGAGATTGCCGAGAACAAAGAGGACTATGCCAAGTTCTACGAGGCCTTTTCGAAGAACTTAAAATTGGGAATACATGAGGACAGCCAGAACAGGGCTAAGCTTGCAGATTTGTTGAGATATCACTCGACAAAGAGCGGAGACGAGATGACGAGCCTCAAGGACTATGTGACCCGAATGAAAGAGGGGCAGAAGGACATCTATTATATTACCGGAGAGAGCAAGAAGGCGGTGGAGAATTCTCCGTTCTTGGAGAGACTGAAAAGGAAAGGATATGAAGTTCTTTTTATGGTGGATGCCATCGATGAGTATGCCATAGGGCAGCTCAAGGAGTACGACGGCAAGAAGCTTGTTTCTGCGACCAAAGAAGGGCTGAAGCTTGAGGAAACAGAGGAGGAAAAGAAGAAGAAGGAAGAGAAGAAAGCTGCCTTTGAGAACCTGTGCAAAGTGATGAAGGACATCTTGGGCGACAAGGTGGAGAAGGTAGTGGTGTCGGATCGCATTGTGGACTCTCCGTGCTGTCTGGTGACTGGCGAGTATGGATGGACGGCGAACATGGAGAGAATAATGAAGGCCCAGGCCTTGCGCGACAGCTCCATGTCGTCCTACATGTCCAGCAAGAAAACAATGGAAATCAATCCGGAGAACGCCATCATGGAGGAGCTGAGAAAGAGAGCCGAGGCGGACAAGCATGACAAATCGGTGAAGGATCTGGTGATGCTCTTGTATGAGACTGCACTGCTCACATCAGGATTCAGTCTGGAGGAGCCGAACACATTCGCTGCCAGGATACACAGGATGCTTAAGCTTGGGCTAAGCATCGAGGACGATGTCACCGCTGAGGTGGATGCAGACATGCCGCCTCTGGAAGATGATTCCTCCATCCAGGAGGAGAGCAAGATGGAGGAGGTAGACTAA___GTAGCCTCTGGAAGATGATGCCTGCATCCAGTACTAGAGCAAGATGGAGGAGGGAGACTAAGTCTCTTGACTCCAGAAGCAAACGAATTCTGTGCTAGATTTCTGGAAATGCATAATTTGCGGGAGGGTTAACTTTTTGTAAGGTTTTCTTTGATTTTTAGTTTGGTAGTGGTTAACAGGTAGAGGTGTACATGTAGAAATTGGCGTTTACCTGCGCGCGTATTTTGCTGTATTTCGTATTTTAATATCCATTTCAAGAAATGAAACTTCTTGTTCCCTAAATCAATGGAGTAGATCAGTGATCTTTATTGGTGTTTAGATGATCATTTTATTAATAGGGCTAAAACAATAGTTAGGTGTCTAACATGTATGGTGTAAGTTAGTTTTTAACATGGGCTAACTGTTTTACAAGAAATATCTATCTCCAAATTC

Fln Alignment:

Contig17340___MADVSMETGDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFEGLTDKSKLDSQPELFIRIVPDKANKCLTIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVNGEPLGRGTKITLFLKEDQLEYLEERRLKDLIKKHSEFISYPIYLWTEKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHEWSLVNKQKPIWMRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYAKFYEAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKRKGYEVLFMVDAIDEYAIGQLKEYDGKKLVSA-XXXXXXXXXXXXXXXXXXXXXAAFENLCKVMKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXXKKTMEINPENAIMEELRKRAEADKHDKSVKDLVMLLYETALLTSGFSLEEPNTFAARIHRMLKLGLSIEDDVTAEVDADMPPLEDDSSIQEESKMEEVD
P51819_______________MADVQM--AEAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKTNKTLSIIDSGVGMAKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVDGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDIEEVDEDKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKDDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRYYSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDDDEEEKKKREEKKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFGARIHRMLKLGLSIDEEEAGD-DADMPALEEEAG--EESKMEEVD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1903	95		5		0.997749
1985	81		18		0.999994
2012		80	20		0.995493
2013			20	80	0.995493
2055		88		11	0.923564
2058		88	11		0.923564
2059	88		11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1987	1998	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain