SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17304

Length: 1950 nt

UniGene Fasta

>sp_v3.0_unigene17304
ATGGGGATTCTTTTAGTTTATATCCGCTTTCGGACAGCTAAAAGGAAATGCAAACGTATTTATATACACACACTTTGAAACTCCATCGAGCCTTCCCATAGCTTCCTGTCGTCTGTGTGTACTCTTTGCTTTATTCATTCATCCGGCGGCAGCAGCAGGAGGCAGAGGGAGCGTTGAGCTAGGAGTGCATGTGACGGCCATGCCATGATTGAAGAAGATCTGTTTTGGTGTTGGGATTCAGGCTTTTCGGCCAGTAACATCATCTTAATCACCACGTGGGGGATTTTTGGCAGCCCGTGTCGATTACCGGAGGGTTAGGGTATGACTCCGTCTGGCACACTGGCTCTTTCAAAGGGAATCGTCAAGGAGCGGGAGATGGCCACCAGCGTCTCCAGTGTTTACGTACATGTAGTTGACAGTGTTATCAAAAGCCTGCGGCCAGAATTTCAGAATGAGGGTTTAGATGACAGTGTCTTAAATGAAGTCCAAGCGCTTTGGGAATTAAAAATGATGCAAAATGGGGCAATACAAGGTCCAATAGATCATGCATCTAATTCTGCTCTAAGAGGCGCAAACGCTCCTATCACCCCAGTTCATGATCTCAATGTACCTTATGAGGCGACTGAAGAATATGAGACTCCTACTGCAGAAATGCTGTTCCCCCCAACACCTGTACAGACACCTATGCAAACTCCCTTGCCCGGTACTGTAGAGCCAGTTATGTACCAGTACTTTCCACCTGGTCCAGGGGAGCCTCTAGCGATTCCTGAGTCAGGGATTGACCCAGAAGTGAAGATAGGAAGGCCAGCTCCTTACATGCAACAACCTGCGAACTGGATGAGTCAAAAACCCCTTGGCGTAGATGTCAATATTGCTTATGAGGAAGAGAGGGATGAGATGGCATCTGGGATTAGTCAACCACCTGTCACAAAGGATTTTTTCACTTTGTCTAGTGGTAAGCGAAAACGGGAAGAGCACCCCCCAAATTATCTTCCAGGGGGCTACATTCCACAACAAGATGGAGCAGGGGATTTTTCTTGGGAGTTAGTGCAATCAAAGGAGGTGGAATTTGCAAACCAAAGTCTTGCACAAGATTGTTCAATGGATGGATCAATGTGTGAAAAGAGGAAGGTGTCTGATCCTCTAATTGCTGCTCTCATTAAAGCCAAGTACCTATCTCTGAAAATTCCGCAGGCTGATGGTGTTAATGACAATCTAGACAGTACGGTTGCAGATGAAGGTTACAATGAAGCAACAGATCAGGAGAAACAAGCTTTAAACGATGTTGCCACTTCGAAAGTGTCAGAGGATGAGGAGCCTTTAAATGATGATGATGATGATCCAGATGACTTAGATCAAAATAGTGTCACGGACCAAGAATAGATGGAAATGTATTCTAAAAGATGGTGTAATGCATCTAAACAATAAAGATATTCTTTTCTCGAAGGCAACTGGGGAATTTGATTTTTAAGCCTTTAGATTACATGCAAGTATCCTGGATCATGTCCATTTAGTTATATGTTAGGGTTGAACTCCAACCCTTCAGTTTCGTCCACATTATCACTTGGACGTACTCTTTGGAACCATATATTCCAGAGTTCTTACTTTGGCTGTAATGATTTGCTCAAATTAATTAAAGTGTCTTTTCTCTTTGGTTTCATTAAGAAGCAGATTGCAACTCTGGAAAGTTTCATCTTTGTTTTGGTCTTTTTCCTTAATTAGCTTCCATTGATATTCTGAGGTGCGGATAAAATCGAATGTGCAAAAGCCGTCTATGACATTACTTGAAACCAGATGATGTACCTTGTAATAACTTTTCAAGTATTAGAACCCAGATATGATCGATATCATTACTGCTGAAATTGCGACGTGATAGATTGCATTACAGCCCAAATTTTTGTCCTGAAATACATGGAATATTTAATAGAAAAATATTTATAATCAAAAAAA

Ace file of the UniGene sp_v3.0_unigene17304

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor IIA, helical [Medicago truncatula]	-	-	1.0e-31	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	transcription factor TFIIA complex	GO:0005672	Cellular Component	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor IIA, alpha/beta subunit	IPR004855	-	-
Sma3	Transcription factor IIA, alpha subunit, N-terminal	IPR013028	-	-
Sma3	Transcription factor IIA, beta-barrel	IPR009088	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G07480.1	Transcription factor IIA, alpha/beta subunit chr1:2296706-2299215 REVERSE LENGTH=375	3.0e-30	50%
RefSeq	Arabidopsis thaliana	NP_172228.3	Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]	4.0e-30	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX18

Fln msg: Separated hits, possible frame ERROR between 1305 and 1364,

Fln protein: MTPSGTLALSKGIVKEREMATSVSSVYVHVVDSVIKSLRPEFQNEGLDDSVLNEVQALWELKMMQNGAIQGPIDHASNSALRGANAPITPVHDLNVPYEATEEYETPTAEMLFPPTPVQTPMQTPLPGTVEPVMYQYFPPGPGEPLAIPESGIDPEVKIGRPAPYMQQPANWMSQKPLGVDVNIAYEEERDEMASGISQPPVTKDFFTLSSGKRKREEHPPNYLPGGYIPQQDGAGDFSWELVQSKEVEFANQSLAQDCSMDGSMCEKRKVSDPLIAALIKAKYLSLKIPQADGVNDNLDSTVADEGYNEATDQEKQALNDVATSKVxxxxxxxxxxxxxxxxxxxxxVSRTKNRWKCILKDGVMHLNNKDILFSKATGEFDF*

Protein Length: 385

Fln nts: ATGGGGATTCTTTTAGTTTATATCCGCTTTCGGACAGCTAAAAGGAAATGCAAACGTATTTATATACACACACTTTGAAACTCCATCGAGCCTTCCCATAGCTTCCTGTCGTCTGTGTGTACTCTTTGCTTTATTCATTCATCCGGCGGCAGCAGCAGGAGGCAGAGGGAGCGTTGAGCTAGGAGTGCATGTGACGGCCATGCCATGATTGAAGAAGATCTGTTTTGGTGTTGGGATTCAGGCTTTTCGGCCAGTAACATCATCTTAATCACCACGTGGGGGATTTTTGGCAGCCCGTGTCGATTACCGGAGGGTTAGGGT_-_ATGACTCCGTCTGGCACACTGGCTCTTTCAAAGGGAATCGTCAAGGAGCGGGAGATGGCCACCAGCGTCTCCAGTGTTTACGTACATGTAGTTGACAGTGTTATCAAAAGCCTGCGGCCAGAATTTCAGAATGAGGGTTTAGATGACAGTGTCTTAAATGAAGTCCAAGCGCTTTGGGAATTAAAAATGATGCAAAATGGGGCAATACAAGGTCCAATAGATCATGCATCTAATTCTGCTCTAAGAGGCGCAAACGCTCCTATCACCCCAGTTCATGATCTCAATGTACCTTATGAGGCGACTGAAGAATATGAGACTCCTACTGCAGAAATGCTGTTCCCCCCAACACCTGTACAGACACCTATGCAAACTCCCTTGCCCGGTACTGTAGAGCCAGTTATGTACCAGTACTTTCCACCTGGTCCAGGGGAGCCTCTAGCGATTCCTGAGTCAGGGATTGACCCAGAAGTGAAGATAGGAAGGCCAGCTCCTTACATGCAACAACCTGCGAACTGGATGAGTCAAAAACCCCTTGGCGTAGATGTCAATATTGCTTATGAGGAAGAGAGGGATGAGATGGCATCTGGGATTAGTCAACCACCTGTCACAAAGGATTTTTTCACTTTGTCTAGTGGTAAGCGAAAACGGGAAGAGCACCCCCCAAATTATCTTCCAGGGGGCTACATTCCACAACAAGATGGAGCAGGGGATTTTTCTTGGGAGTTAGTGCAATCAAAGGAGGTGGAATTTGCAAACCAAAGTCTTGCACAAGATTGTTCAATGGATGGATCAATGTGTGAAAAGAGGAAGGTGTCTGATCCTCTAATTGCTGCTCTCATTAAAGCCAAGTACCTATCTCTGAAAATTCCGCAGGCTGATGGTGTTAATGACAATCTAGACAGTACGGTTGCAGATGAAGGTTACAATGAAGCAACAGATCAGGAGAAACAAGCTTTAAACGATGTTGCCACTTCGAAAGTGTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTGTCACGGACCAAGAATAGATGGAAATGTATTCTAAAAGATGGTGTAATGCATCTAAACAATAAAGATATTCTTTTCTCGAAGGCAACTGGGGAATTTGATTTTTAA___GCCTTTAGATTACATGCAAGTATCCTGGATCATGTCCATTTAGTTATATGTTAGGGTTGAACTCCAACCCTTCAGTTTCGTCCACATTATCACTTGGACGTACTCTTTGGAACCATATATTCCAGAGTTCTTACTTTGGCTGTAATGATTTGCTCAAATTAATTAAAGTGTCTTTTCTCTTTGGTTTCATTAAGAAGCAGATTGCAACTCTGGAAAGTTTCATCTTTGTTTTGGTCTTTTTCCTTAATTAGCTTCCATTGATATTCTGAGGTGCGGATAAAATCGAATGTGCAAAAGCCGTCTATGACATTACTTGAAACCAGATGATGTACCTTGTAATAACTTTTCAAGTATTAGAACCCAGATATGATCGATATCATTACTGCTGAAATTGCGACGTGATAGATTGCATTACAGCCCAAATTTTTGTCCTGAAATACATGGAATATTTAATAGAAAAATATTTATAATCAAAAAAA

Fln Alignment:

Contig17304___MTPSGTLALSKGIVKEREMATXXXXXXXXXXXXXXXXLRPEFQNEGLDDSVLNEVQALWELKMMQNGAIQGPIDHASNSALRGANAPITPVHDLNVXXXXXXXXXXXXXXMLFXXXXXXXXXXXXXXGTVEPVMYQYFPPGPGEPLAIPESGIDPEVKIGRPAPYMQQPANWMSQKPLGVDVNIAYEEERDEMASGISQPPVTKDFFTLSSGKRKREEHPPNYLPGGYIPQQDGAGDFSWELVQSKEVEFANQSLAQDCSMDGSMCEKRKVSDPLIAALIKAKYLSLKIPQADGVNDNLDSTVADEGYNEATDQEKQALNDVATSKVSxxxxxxxxxxxxxxxxxxxxVSRTKNRWKCILKDGVMHLNNKDILFSKATGEFDF
A9NX18_______________MTPSGTLALSKGVVKEREMAASVSSVYVHVVDSVIKSLRPEFQNEGLDDSVLNEVQALWELKMMQNGAIQGPIDHASNSALRGANAPITPVHDLNVPYEPTEEYETPTAEMLFPPTPVQTPMQTPLPGTAEPVMYQYFPPGPGEPLATPELGIDPEAKIGRPAPYMQPPANWMSQKPLGVDVNIAYEEERDEMAAGISQPPITKDFFTLSSGKRKREDHPPNYLPGGYIPQQDGAGDFSWELVQSKEVEFANQRLTQNCSMDGSMFEKRQMSDPLIAALVKAKCLSLEIPQVDGVNDNLDSTVADEGYIEATDQEQQALNDVATSKVSxxxxxxxxxxxxxxxxxxxxVSRTKNRWKCILKDGVMHLNHKDILFSKATGEFDF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1942	12	12		75	0.975346

SSRs (tot: 1)

Start position	End position	Sequence	Length
1325	1341	ATG ATG ATG ATG ATG AT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain