SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17291

Length: 2519 nt

UniGene Fasta

>sp_v3.0_unigene17291
AATGTAGAACGACGAAGGTTCTGGAATCATCTGGTAATTAGGGTTAGGGTTAGAGGTCTGCCTCCTGAACCTATTTATGGTATTCAAGATCAACATTGAATAGGGAAGTTAGAAGGGTAGAGACTTTGCTGCTCTGCCTTTGAAGTATCCGTTGCATCTCTGTGTTATTTAATCGTTCTTTGAATTTGGGGGTAATATCTTCTGTAGAGTTTTGAAATGGCCGGCAAGGGAGAGGGCCCTGCGATCGGTATAGATCTCGGTACTACGTATTCCTGCGTTGGGGTGTGGCAGCATGACAGAGTGGAGATCATCGCCAATGACCAAGGGAACAGGACCACTCCCTCCTATGTGGGTTTCACTGATACTGAGCGACTCATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAATCCCACCAATACCGTTTTTGATGCCAAGAGATTGATTGGAAGGCGTTTCAGTGACGCTACTGTTCAGAGTGACATCAAGATGTGGCCTTTTAAGTTAACACCGGGGCCTGCTGACAAGCCTATGATTGTTGTTAATTACAAAGGCGAGGAGAAGCAGTTTGCTGCAGAGGAGATTTCATCCATGGTGTTAATGAAGATGAGGGAGATTGCAGAGGCTTACCTTGGTGTCACAATAAAGAATGCCGTTGTCACTGTTCCTGCATATTTCAACGACTCCCAGAGGCAGGCTACCAAGGATGCTGGAGTGATTGCTGGGTTGAATGTGATGAGAATAATCAATGAGCCTACTGCTGCTGCTATTGCCTATGGTTTGGACAAGAAGGCTGGCAGTGTGGGTGAGAAAAATGTATTGATCTTTGATTTGGGGGGTGGAACATTTGATGTTTCGCTTTTGACTATTGAAGAGGGTATTTTTGAAGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGTGAAGATTTTGATAATAGGATGGTTAACCACTTTGTACAGGAATTTAAAAGGAAGTTCAAGAAGGATATTAGTGGTAGTGCTAGGGCTTTGAGAAGATTGAGGACCGCTTGTGAAAGGGCCAAGAGGACTCTTTCATCCACTGCTCAGACAACCATAGAGATTGATTCTTTGTATGAAGGCATCGACTTTTATTCAACAATTACTAGAGCTAGGTTCGAAGAGTTGAATATGGATCTATTCAGAAAGTGTATGGAGCCTGTTGAAAAGTGTTTGAGAGATGCTAAGATGGATAAAAGCTCTATCCATGATGTTGTTTTGGTTGGTGGGTCTACTAGAATTCCCAAAGTGCAACAGTTGTTGCAGGACTTCTTTAATGGGAAAGAGCTCTGCAAGAGCATTAACCCCGATGAGGCTGTTGCCTATGGTGCTGCAGTGCAGGCCGCTATTCTAAGCGGAGAAGGCAATGAGAAGGTTCAAGACCTGTTACTTCTTGACGTAACTCCTCTCTCCCTTGGTCTGGAGACAGCAGGCGGTGTTATGACTGTTTTGATTCCTAGAAATACTACCATTCCTACAAAGAAAGAGCAGGTCTTCTCTACATACTCGGACAACCAGCCCGGTGTCCTCATTCAAGTGTATGAAGGTGAGAGAACACGAACAAGAGATAACAATTTGTTGGGCAAGTTTGAATTGTCTGGTATCCCACCTGCTCCCAGAGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTTTCGGCTGAGGACAAGACCACTGGACAGAAGAACAAGATTACAATCACTAATGACAAGGGTAGGTTGAGCAAGGAAGAGATTGAGAAGATGGTTCAGGAAGCTGAGAAGTACAAGTCTGAGGACGAAGAGCACAAGAGGAAGGTTGAGTCCAAAAACTCGTTAGAGAACTATGCTTATAACATGAGGAACACGATCAAGGATGAGAAAATTGCTGCCAAGGTGGATCCATCCGACAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGGCTGATGAATTTGATGATAAAATGAAGGAACTTGAGAGCATCTGCAACCCGATAATTGCAAAGATGTATCAAGGTGCAGGTGGTGACGTGCCTGGAGGTGGCTTTGGTGGCGTTCCTCCTGAGGGTGGACCGTCCAGCGGTGGAGGTGCTGGCCCTAAGATTGAGGAAGTGGACTAATCTGGCTCTTTCTCAAATGCATATGATATTACTGTATTTTCTGTCGTAAGAATTATATTATTATTAGCATAATTTTGATGTTGAAATTTATATTTAATGATGCAATTGCCGGCTATTATGGCGGCGATTTTATGTTAATCTTGAACCTCAATGCAAGAGATGGCCATTGCGGTGATTTCATACGTACTTATGGTGTTGGAATATTTATTTGATGTCGCAATCAAGGGCTGCTTTATGATGATTTTCTTTTTGATTTTCTGTTTAATTTCATAGGATGATTCACTTGATAATGGCAAAATCAGTGACTGTTGTAATTTGTATGCTTTTATCATTTGATGAATGTC

Ace file of the UniGene sp_v3.0_unigene17291

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 70 n=3 Tax=Embryophyta RepID=C9WCK6_9MARC	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Chromosome chr8 scaffold_23, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00021301001;

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G02500.1	HSC70-1, HSP70-1, AT-HSC70-1, HSC70 heat shock cognate protein 70-1 chr5:554055-556334 REVERSE LENGTH=651	92%
RefSeq	Arabidopsis thaliana	NP_195870.1	heat shock 70kDa protein 1/8 [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002332589.1	predicted protein [Populus trichocarpa]	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg:

Fln protein: MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDATVQSDIKMWPFKLTPGPADKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKFKKDISGSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKRKVESKNSLENYAYNMRNTIKDEKIAAKVDPSDKKKIDDAIEQAIQWLDNNQLAEADEFDDKMKELESICNPIIAKMYQGAGGDVPGGGFGGVPPEGGPSSGGGAGPKIEEVD*

Protein Length: 654

Fln nts: AATGTAGAACGACGAAGGTTCTGGAATCATCTGGTAATTAGGGTTAGGGTTAGAGGTCTGCCTCCTGAACCTATTTATGGTATTCAAGATCAACATTGAATAGGGAAGTTAGAAGGGTAGAGACTTTGCTGCTCTGCCTTTGAAGTATCCGTTGCATCTCTGTGTTATTTAATCGTTCTTTGAATTTGGGGGTAATATCTTCTGTAGAGTTTTGAA_-_ATGGCCGGCAAGGGAGAGGGCCCTGCGATCGGTATAGATCTCGGTACTACGTATTCCTGCGTTGGGGTGTGGCAGCATGACAGAGTGGAGATCATCGCCAATGACCAAGGGAACAGGACCACTCCCTCCTATGTGGGTTTCACTGATACTGAGCGACTCATTGGAGATGCCGCAAAGAATCAGGTCGCCATGAATCCCACCAATACCGTTTTTGATGCCAAGAGATTGATTGGAAGGCGTTTCAGTGACGCTACTGTTCAGAGTGACATCAAGATGTGGCCTTTTAAGTTAACACCGGGGCCTGCTGACAAGCCTATGATTGTTGTTAATTACAAAGGCGAGGAGAAGCAGTTTGCTGCAGAGGAGATTTCATCCATGGTGTTAATGAAGATGAGGGAGATTGCAGAGGCTTACCTTGGTGTCACAATAAAGAATGCCGTTGTCACTGTTCCTGCATATTTCAACGACTCCCAGAGGCAGGCTACCAAGGATGCTGGAGTGATTGCTGGGTTGAATGTGATGAGAATAATCAATGAGCCTACTGCTGCTGCTATTGCCTATGGTTTGGACAAGAAGGCTGGCAGTGTGGGTGAGAAAAATGTATTGATCTTTGATTTGGGGGGTGGAACATTTGATGTTTCGCTTTTGACTATTGAAGAGGGTATTTTTGAAGTGAAGTCTACAGCTGGTGACACCCATCTGGGTGGTGAAGATTTTGATAATAGGATGGTTAACCACTTTGTACAGGAATTTAAAAGGAAGTTCAAGAAGGATATTAGTGGTAGTGCTAGGGCTTTGAGAAGATTGAGGACCGCTTGTGAAAGGGCCAAGAGGACTCTTTCATCCACTGCTCAGACAACCATAGAGATTGATTCTTTGTATGAAGGCATCGACTTTTATTCAACAATTACTAGAGCTAGGTTCGAAGAGTTGAATATGGATCTATTCAGAAAGTGTATGGAGCCTGTTGAAAAGTGTTTGAGAGATGCTAAGATGGATAAAAGCTCTATCCATGATGTTGTTTTGGTTGGTGGGTCTACTAGAATTCCCAAAGTGCAACAGTTGTTGCAGGACTTCTTTAATGGGAAAGAGCTCTGCAAGAGCATTAACCCCGATGAGGCTGTTGCCTATGGTGCTGCAGTGCAGGCCGCTATTCTAAGCGGAGAAGGCAATGAGAAGGTTCAAGACCTGTTACTTCTTGACGTAACTCCTCTCTCCCTTGGTCTGGAGACAGCAGGCGGTGTTATGACTGTTTTGATTCCTAGAAATACTACCATTCCTACAAAGAAAGAGCAGGTCTTCTCTACATACTCGGACAACCAGCCCGGTGTCCTCATTCAAGTGTATGAAGGTGAGAGAACACGAACAAGAGATAACAATTTGTTGGGCAAGTTTGAATTGTCTGGTATCCCACCTGCTCCCAGAGGTGTTCCTCAAATCACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTTTCGGCTGAGGACAAGACCACTGGACAGAAGAACAAGATTACAATCACTAATGACAAGGGTAGGTTGAGCAAGGAAGAGATTGAGAAGATGGTTCAGGAAGCTGAGAAGTACAAGTCTGAGGACGAAGAGCACAAGAGGAAGGTTGAGTCCAAAAACTCGTTAGAGAACTATGCTTATAACATGAGGAACACGATCAAGGATGAGAAAATTGCTGCCAAGGTGGATCCATCCGACAAGAAGAAGATTGACGATGCAATCGAGCAGGCAATCCAATGGTTGGATAACAACCAGCTGGCGGAGGCTGATGAATTTGATGATAAAATGAAGGAACTTGAGAGCATCTGCAACCCGATAATTGCAAAGATGTATCAAGGTGCAGGTGGTGACGTGCCTGGAGGTGGCTTTGGTGGCGTTCCTCCTGAGGGTGGACCGTCCAGCGGTGGAGGTGCTGGCCCTAAGATTGAGGAAGTGGACTAA___TCTGGCTCTTTCTCAAATGCATATGATATTACTGTATTTTCTGTCGTAAGAATTATATTATTATTAGCATAATTTTGATGTTGAAATTTATATTTAATGATGCAATTGCCGGCTATTATGGCGGCGATTTTATGTTAATCTTGAACCTCAATGCAAGAGATGGCCATTGCGGTGATTTCATACGTACTTATGGTGTTGGAATATTTATTTGATGTCGCAATCAAGGGCTGCTTTATGATGATTTTCTTTTTGATTTTCTGTTTAATTTCATAGGATGATTCACTTGATAATGGCAAAATCAGTGACTGTTGTAATTTGTATGCTTTTATCATTTGATGAATGTC

Fln Alignment:

Contig17291___KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDATVQSDIKMWPFKLTPGPADKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKAGSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKFKKDISGSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEXXXXXXXXXXXILSGEGNEKVQDXXXXXXXXXXXXXETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKRKVESKNSLENYAYNMRNTIKDEKIAAKVDPSDKKKIDDAIEQAIQWLDNNQLAEADEFDDKMKELESICNPIIAKMYQ
B8LRY5_______________KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVSYKGEDKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKKDLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQDAEKYKAEDEELKLKVEAKNSLENYAYNMRNTIRDDKIAGKLDPADKKKIEDAVDGIISWLDGNQLAEKEEFEDKLKELESTCNPIIAKMYQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1454			98	1	0.991343
1456	1		98		0.99243
1457			98	1	0.99293
1509	0		96		0.997458
1512	0		94	4	1.0
1513		0	94	4	1.0
1562	97		2		0.956062
1564	3		95	1	0.99967
1565	95	3		1	0.99967
1567		1	95	3	0.99967
1568	1		93	3	0.998416
1628	2	91			0.993509
1831	92			7	0.999664
2238	96		3		0.988113
2313	95		4		0.99692
2362		88	11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain