SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17283

Length: 1630 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17283

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UPF0016 protein 5 [Arabidopsis thaliana] sp\|Q9SX28.1\|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb\|AAD49978.1\|AC008075_11 Is a member of PF\|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj\|BAC43336.1\| putative tran	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0016	IPR001727	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68650.1	Uncharacterized protein family (UPF0016) chr1:25775825-25777683 FORWARD LENGTH=228	68%
RefSeq	Arabidopsis thaliana	NP_177032.1	UPF0016 protein 5 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002314881.1	predicted membrane protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU88

Fln msg:

Fln protein: MGVSIMEGLTKSLAMTVLSEVGDKTFFVAAIMAMRHPRRFILVGSLAALYIMTVISVFFGWAAPNLLSRKWTHLVTTVLFFAFGLWSLWEGITEDGESEELAEVEAKLSADRKENGISTKATVKSKVDDDTKKQERPFLTKYFSPILLEAFSLTFFGEWGDKSQLATIGLAADENPVGVVLGGIIGHTLCTAAAVFGGKSLAARISERMVAISGGILFVIFGIQSLLTKVEDA*

Protein Length: 235

Fln nts: GCTAGTTAGTGTTAGTTTGCATCTATTACCCACCATTTCATCGGATCGTCCCAATGGGGAGCTTCTTGGCGTTCGATGCAGAGGCCGTTCGGAAGCTTACATGCTGTATCATGTATATATTTCCTGTGAGTTAAACTCAAAACTACCCCCAATTAAATTGGTTGCCTGGAACTGCCAGAGAGGAAGAAGAAGTATGAAAGTGGAATGATGGCCCATTGATTGGAAAATTTCTCCCGAATTTCTGGCAGGCGATGCTGACTGATTTTGATTGGATTCACAAATACTAGTATCAGGACTGTTATTGGAGACCAAATCAAACCAGCAGCAGCGGCCTCTACTAGGGCAACAACA_-_ATGGGTGTCTCAATAATGGAGGGTTTAACGAAGTCTCTGGCAATGACTGTCCTTTCTGAAGTAGGCGACAAAACCTTCTTCGTCGCCGCGATCATGGCTATGCGGCATCCCAGGAGATTTATCTTGGTTGGATCTCTTGCAGCTCTATATATTATGACTGTGATCTCTGTATTTTTCGGCTGGGCTGCACCAAATCTTTTATCTCGGAAATGGACTCATCTTGTTACAACAGTCTTGTTCTTTGCATTTGGTTTGTGGTCATTATGGGAAGGAATCACAGAGGATGGAGAATCAGAAGAGTTGGCTGAGGTGGAAGCTAAGCTGTCTGCTGATCGGAAAGAAAATGGAATTTCAACTAAGGCAACTGTAAAATCAAAGGTGGATGATGATACAAAAAAACAAGAGAGACCTTTCCTTACGAAATATTTTTCACCAATTCTCCTAGAGGCATTTTCGCTGACATTTTTTGGAGAGTGGGGTGATAAGAGCCAGCTTGCTACAATAGGACTGGCGGCAGACGAAAATCCAGTTGGTGTAGTTCTCGGGGGCATTATAGGGCACACTCTTTGTACGGCTGCTGCTGTGTTTGGAGGGAAGTCTTTGGCAGCTCGGATATCTGAAAGAATGGTTGCAATTTCTGGTGGAATTCTTTTTGTTATATTTGGCATTCAGTCTTTGCTGACGAAAGTGGAGGATGCCTGA___AAGTTCCTCTGGCATTTGATGATGATTAAGAACTGCTTTATTATCTTTTCCTGTGCCCATGTCTGATGTCCACGATTACTTGCTGCTTTCATTGTTACATTTTTCATCTCACTGGGTAATTTCCAGCTGAATTGCTGCAGTAATTCAATACATATTTCTGTAGCAAAAAACACTTGCAAAGAACTCTTTTTAAAATGTTTATGATTTTCCAGCCTTGTTTTTGTCATTGTTAAATTTTCATTTTGGAAGAGAAACACGCTGACAAATTTTACTTCACAGTTTGCATTAATTACTTTTTATAATAAAATTATAATTTTCTATATTGCATGGGGATCTGACCCCTTATGAAGAAACCTTAAGCACCATTCCGGTGCTTCGGGGACTTGTGAAACCCTAGGAAATGTCCTCAAACTGCTGGGTACTTCATCAGGGACTTGAAATTTCTGGCTGTCCCCAAGATGTTCCAGGGAGATTTCAAGGGTGTTTTGGACAGATTTCAAGGATGTTATGGCCAGATTCCATGGATGTTCTGGGCATGTACCTTCAGTTTTGACAATGGACATTGATGATTGGACAA

Fln Alignment:

Contig17283___MGVSIMEGLTKSLAMTVLSEVGDKTFFVAAIMAMRHPRRFILVGSLAALYIMTVISVFFGWAAPNLLSRKWTHLVTTVLFFAFGLWSLWEGITEDGESEELAEVEAKLSADRKENGISXXXXXXXXXXXXXXXQERPFLTKYFSPILLEAFSLTFFGEWGDKSQLATIGLAADENPVGVVLGGIIGHTLCTAAAVFGGKSLAARISERMVAISGGILFVIFGIQSLLTKVED
A9NU88_______________MGVSVMEGFTKSLAMTILSEIGDKTFFVAAIMAMRHPRRFVLAGSLGALYIMTVISVFFGWAAPNVLSRKFSHLVTTVLFFAFGLWSLWEGLTEGGASEELAEVEAKLSADPKENGISAKATVKSKVNDDTKKQERPFLTQFFSPILLEAFSLTFFGEWGDKSQIATIGLAADENPVGVVLGGILGHTLCTAAAVFGGKTLAARISERMVAVSGGILFVIFGIQSLLTKVEN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
310		76	23		1.0
625	50		50		1.0
1175	33			66	0.997452
1177		66	33		0.997452
1178		66	33		0.997452
1179	66		33		0.997452
1310	75			25	0.996473
1312			75	25	0.996473
1579	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain