SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17261

Length: 1877 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17261

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=2 Tax=Pinaceae RepID=C9EIK5_9CONI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	L-malate dehydrogenase activity	GO:0030060	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G47520.1	MDH malate dehydrogenase chr3:17513657-17514868 FORWARD LENGTH=403	77%
RefSeq	Arabidopsis thaliana	NP_190336.1	malate dehydrogenase [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002330960.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUM0

Fln msg:

Fln protein: MASATLSMSSVSVSGFLAPISETRRCGAGLQASAVSFPTKKVFQTFSGLKAGVACESEASFFSHETNAVLWSSVRRSKSTENQQIVQKAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANSLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNCPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEGLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVISSVLEGLTEYEQKALEALKPELKASIEKGIAFANKQAPAGTAA*

Protein Length: 420

Fln nts: TACATGGGGATGAAAGAAAATGGCTAAACCTTTCCCGCACAGGCATTTGGAGCATCCGCCTTCACACCCGGCCATAAGCTGCGGATCTCACGCCCTCTCATAAGCTTCCAATTTTCGGAATCGCAGGTTGGAAGCGGTTATCTTTTCAAGCAGGATTGGGGACCATATCTCCGTCCAGAGGAAAATAGCGAGTCTGTGGCTCAGCTGGTCAGTTGAGGAGATTGATTCATAGCTGAGGAGAATCGCACAGAACACATTGTCCATAGTTGAACCCATCTTTTGGCTGAAAGCTCCTGGTGTTGAAGAGCACA_-_ATGGCATCTGCAACATTGTCCATGAGTTCAGTTTCTGTCTCTGGGTTTCTAGCACCCATTAGTGAAACTCGGCGATGTGGGGCTGGACTCCAGGCTTCCGCAGTTAGCTTTCCTACGAAGAAGGTTTTCCAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCTTGCGAATCTGAAGCATCCTTCTTTAGTCACGAGACAAATGCAGTTCTTTGGTCTTCAGTTAGAAGGTCAAAGTCAACAGAAAATCAACAGATTGTTCAGAAAGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCAGGAGGGATTGGACAACCTCTTTCACTGTTGATTAAAATGTCTCCTTTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGAGTTGCTGCAGATCTCAGCCACTGTAACACTCCAGCACAGGTTCTAGATTTTACCGGGCCAGCTGAATTGGCAAATTCTTTGAAGGGTGTGGATGTCGTGGTCATCCCGGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATAGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACTGTCCCAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACTGTACCCATCGCCGCTGAGGTGCTCAAGCAGAAAGGTGTATATGATCCTAAAAAGCTGTTTGGTGTCACCACCCTGGATGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATCGATGTTGATGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACAAAGCCTTCTGTAACATTCACCCAGGAGGAGATCGAAGGGCTAACAGTTAGAATTCAGAACGCGGGAACTGAAGTTGTGGAAGCAAAAGCAGGTGCTGGATCTGCAACACTGTCCATGGCTTATGCTGCTGCGAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCAGATGTGTACGAGTGTTCCTATATTCAGTCTGAACTGACAGAATTACCTTTCTTTGCATCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCAGTTATTTCCTCAGTTCTTGAGGGGCTCACTGAGTATGAACAGAAAGCCCTAGAAGCTCTGAAGCCGGAGTTGAAGGCAAGCATTGAAAAAGGCATTGCGTTTGCAAACAAGCAAGCACCGGCTGGCACTGCTGCTTGA___ATACATTCCATTTAAGTTGGAATTGTAGGACAAATAAGATGAGCAGCATACACTACCGCTTTAGGGAGCCATAATTTTTGCAGTTTAGGCATAGATTTTAAGTTTCGGTACCAAAGACATTTTTCAGTCCTTTTCAGGAGCTACGAGTGCTGACTTTCCTATGCAGGTTTGCCGATTCACGGTCATCTACTTTCTCATGTACTTGGCTTTTCCAAAGGAATTTTCAATAAGGTCTTTATTGATTTAATGATTATTTTACCAGAATCTGTTAATACAAGTTTCCAATACCACATCCTTTTTGCTTATTGC

Fln Alignment:

Contig17261___GFLAPISETRRCGAGLQASAVSFPTKKVFQTFSGLKAGVACESEASFFSHETNAVLWSSVRRSKSTENQQIVQKAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANSLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNCPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEGLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVISSVLEGLTEYEQKALEALKPELKASIEKGIAFANK
A9NUM0_______________GFLAPICETRPSGAGLQASAVSFPTKKVFNTFSGLKAGVACESEASFFSHETNAVLWSSVSRPRSAENRQIVPSAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQILDFTGPAELANSLKDVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQDEIEQLTIRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKKGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1018	90	10			0.90298
1020	90			10	0.90298
1021	90			10	0.90298
1103		16		83	0.994512
1244	88		11		0.923564
1727		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain