SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17260

Length: 2334 nt

UniGene Fasta

>sp_v3.0_unigene17260
AACATGGGGACGATTCGATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGCGTTTTTCTCGCCTGTAACTTCTTCGCTCCGAATCCATCTTTTTGCTACAAGGGTTTGAAGCTCGTTTCGGCGTTTTTCTCGTCTGTAAATTCTTCGCTCCGAATCCATCTTTTTGCGACAAGGGTTTCGTTTCGGCGTTTTTCTCGTCTGTAACTTCTTCGCTCCGTATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGTGTTTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATCATGGCGGAAGCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGATCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGTTGGATGCACAACCAGAACTGTTTATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGATGAGAGTTCATGAAGTTTCACATGAATGGAGTCTTGTGAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTCGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATCCTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCATGAGGATAGCCAGAACAGATCCAAGATTGCGGACTTGCTCATGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACAAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCAGTTGAGAACTCTCCATTCTTGGAGCGTCTGAAGAAGAAGGGTTACGAAGTTCTTTTCATGGTTGAGGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGCAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAAAAAGGAAGAGTTGAAGTCCCTATTTGATGGTCTCTGCAAAGTTATCAAGGATATTCTCGGGGACAAGGTGGAGAAAGTTGTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGTTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAGTCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTTTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCAGAGGGCAGCAAGATGGAGGAGGTGGATTAATTCAGTGTTTTATTAGCTTTTTGTTTAGATAGTTACATTGGATCAGATTTTGTAGTGGTAATTTCGGATT

Ace file of the UniGene sp_v3.0_unigene17260

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	molecular chaperone Hsp90-2 [Nicotiana benthamiana]	-	-	0.0	78%
FL-Next	sp=Heat shock protein 90-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%
Sma3	Heat shock protein 90	-	-	9.80909e-45	-

Source	Gene names
Sma3	At5g52640; At5g56000; At5g56010; At5g56030; CHLREDRAFT_138117; GSVIVT00002550001; GSVIVT00004280001; GSVIVT00033436001; HSC80; HSP81-1; HSP81-2; HSP81-3; HSP81.2; HSP82; HSP83; HSP83A; HSP90; HSP90-1; HSP90-2; HSP90A; HSP90_1; Hsp90; LOC_Os09g30438; MDA7.

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	protein stabilization	GO:0050821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Late embryogenesis abundant protein, LEA-18	IPR018930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G56000.1	Hsp81.4, AtHsp90.4 HEAT SHOCK PROTEIN 81.4 chr5:22677602-22680067 REVERSE LENGTH=699	82%
RefSeq	Arabidopsis thaliana	NP_200414.1	heat shock protein 81-2 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002329963.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P55737

Fln msg: your sequence is shorter than subject: 653 - 699

Fln protein: MAEAGEVETFAFQAEINQLLSLIINTFYSNKEIFLREIISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKKMRVHEVSHEWSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLMYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVEAIDEYAIGQLKEYEGKKLVSATKEGLKLEESEDEKKKKEELKSLFDGLCKVIKDILGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD*

Protein Length: 654

Fln nts: AACATGGGGACGATTCGATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGCGTTTTTCTCGCCTGTAACTTCTTCGCTCCGAATCCATCTTTTTGCTACAAGGGTTTGAAGCTCGTTTCGGCGTTTTTCTCGTCTGTAAATTCTTCGCTCCGAATCCATCTTTTTGCGACAAGGGTTTCGTTTCGGCGTTTTTCTCGTCTGTAACTTCTTCGCTCCGTATCCATCTTTTCTCTACAAGGGTTTGAAGGCTCGTTTCGGTGTTTTTCTCGTCTGTGTTTTCGTTAAGCTTTCGAGGAGAAATC_-_ATGGCGGAAGCTGGTGAAGTTGAGACCTTTGCCTTCCAGGCTGAGATCAACCAGCTTTTGAGTCTTATTATCAACACTTTTTACAGCAACAAGGAAATTTTTCTTAGAGAGATCATCAGCAATTCCTCAGATGCTTTGGACAAGATCCGGTTTGAGAGTCTCACGGACAAGAGTAAGTTGGATGCACAACCAGAACTGTTTATTCACATTATTCCAGACAAGACAAACAATTCGTTGACTATTATCGACAGTGGTATTGGCATGACCAAATCTGATCTCGTGAACAACCTGGGAACCATTGCACGATCTGGCACGAAAGAGTTTATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTGGGTTTCTACTCTGCGTATTTGGTTGCTGAGAAGGTGGTTGTCACCACCAAACACAATGACGATGAGCAATATATTTGGGAATCGCAGGCCGGCGGATCGTTTACTGTTACCAGAGACACAAGTGGGGAGGTTCTTGGTAGAGGAACCAAAATCACACTGTTGCTCAAAGATGATCAGCTGGAATACCTCGAGGAGAGGCGTTTGAAGGACCTTATTAAGAAGATGAGAGTTCATGAAGTTTCACATGAATGGAGTCTTGTGAACAAACAGAAGCCTATCTGGATGAGAAAACCAGAGGATATTACGAAGGAAGAATATGCGGCATTTTACAAGAGTCTGACAAATGACTGGGAAGAACACTTGGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAGGCCGTCCTCTTTGTTCCCAAGAGGGCACCGTTTGATCTCTTCGATACCAAGAAGAAGTTAAATAACATCAAGCTCTATGTCAGGCGTGTATTCATCATGGACAACTGTGAAGAGTTGATCCCGGAATACCTTAGCTTTGTAAAGGGTGTCGTGGACTCTGAAGACCTTCCTTTGAATATTTCTCGCGAGACTCTCCAACAAAACAAAATCCTAAAAGTTATTAGGAAGAATCTTGTCAAGAAGTGTGTAGAGTTGTTCTTTGAAATTGCTGAAAACAAGGAGGATTACAATAAATTCTACGAGGCATTTTCAAAGAACCTTAAGCTTGGGATTCATGAGGATAGCCAGAACAGATCCAAGATTGCGGACTTGCTCATGTACCACTCTACTAAGAGTGGAGATGAGATGACCAGCTTGAAGGATTATGTGACAAGAATGAAGGAGGGTCAAAAGGATATCTATTACATAACTGGTGAAAGCAAGAAGGCAGTTGAGAACTCTCCATTCTTGGAGCGTCTGAAGAAGAAGGGTTACGAAGTTCTTTTCATGGTTGAGGCTATTGATGAATATGCCATTGGGCAATTGAAGGAATACGAAGGCAAAAAATTGGTGTCTGCCACAAAGGAGGGGTTGAAATTAGAGGAAAGTGAAGATGAGAAGAAGAAAAAGGAAGAGTTGAAGTCCCTATTTGATGGTCTCTGCAAAGTTATCAAGGATATTCTCGGGGACAAGGTGGAGAAAGTTGTTGTCTCTGACCGTGTTGTGGATTCTCCTTGCTGTTTGGTTACTGGAGAGTATGGATGGACTGCTAACATGGAAAGAATCATGAAGGCCCAGGCTTTGAGAGACAGTAGCATGTCAAGTTACATGTCAAGCAAGAAGACCATGGAAATTAATCCCGAGAATCCTATCATGGATGAGCTTAGAAAGAGGGCTGAAGCAGACAAAAATGACAAGTCTGTCAAGGATTTAGTTCTATTGATGTACGAAACTGCTTTGTTGACATCAGGGTTTAGCCTTGATGATCCTAATACTTTTGGTAACAGGATTCACAGGATGATGAAGCTGGGTTTAAGTATTGATGAGGATGAAAGTCTTCCTGACACCGATGCTGAAATGCCTCCTCTTGAAGAGGCTGCTGATGCAGAGGGCAGCAAGATGGAGGAGGTGGATTAA___TTCAGTGTTTTATTAGCTTTTTGTTTAGATAGTTACATTGGATCAGATTTTGTAGTGGTAATTTCGGATT

Fln Alignment:

Contig17260___EVETFAFQAEINQLLSLIINTFYSNKEIFLREIISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNSLTIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYIWESQAGGSFTVTRDTSGEVLGRGTKITLLLKDDQLEYLEERRLKDLIKK---------------------------------------------------MRVHEVSHEWSLVNKQKPIWMRKPEDITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLMYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVEAIDEYAIGQLKEYEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXFDGLCKVIKDILGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDXXXXXXXXXKKTMEINPENPIMDELRKRAEADKNDKSVKDLVLLMYETALLTSGFSLDDPNTFGNRIHRMMKLGLSIDEDESLPDTDAEMPPLEEAADAEGSKMEEVD
P55737_______________DAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVADKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGETLGRGTKMVLYLKEDQLEYLEERRLKDLVKKHSEFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENSIMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDDDAV-EADAEMPPLEDDADAEGSKMEEVD

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
231	25			75	0.996473
232	25			75	0.996473
234		75	25		0.996473
607	6		93		0.999364
610		93		6	0.999364
611			93	6	0.999364
644	17	82			1.0
645		11		88	0.999952
646	11		82	5	0.999919
647		87		12	0.999964
666		15	84		0.999986
713	80		20		0.995493
748			80	20	0.995493
923	66		33		0.997452
924		33	66		0.997452
926	33			66	0.997452
929	66	33			0.997452
930		66		33	0.997452
1312	33			66	0.997452
1313		33		66	0.997452
1315			66	33	0.997452
1316			66	33	0.997452
1491		16	83		0.994512
1708		88	11		0.923564
2075		11	88		0.923564
2080	83	16			0.994512
2270		85		15	1.0
2272	40		60		1.0
2302	50	50			1.0
2333	16		83		0.994512
2334		16	83		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain