SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17257

Length: 1768 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17257

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Actin-11 n=180 Tax=Spermatophyta RepID=ACT11_ARATH	-	-	96%
FL-Next	tr=Actin; Picea rubens (Red spruce) (Picea australis).	-	-	100%
Sma3	Actin	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin, conserved site	IPR004001	-	0.0	-
Sma3	Actin-like	IPR004000	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G09810.1	ACT7 actin 7 chr5:3052809-3054220 FORWARD LENGTH=377	97%
RefSeq	Arabidopsis thaliana	NP_196543.1	actin 7 [Arabidopsis thaliana]	97%
RefSeq	Populus trichocarpa	XP_002298710.1	actin 1 [Populus trichocarpa]	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9SPI7

Fln msg:

Fln protein: MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYVALDYEQELETAKSSSSIDKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

Protein Length: 379

Fln nts: CCTTACAAATACTGTATATACTGAGGGCGTACACAGTAATATCTGACTAGAAATGGATAATCGGAAGAGTCAATTGATTGAGACTTCCTTGTGAATCATTTTTTAATTGAATCTGGATCAGACTGCTTTCGCTTTGCTCTTGCAAACGACTCGTATGTGCTTATCAGGTTTATGAGTTCACTTGAGATCTTTCTACTCAGCCAGTCAGGCTGTCCCTAGATGGAGCAGGAAAGATCCTTGGCCTAGTCTGGTCCTGCACTGCTTGCCTTGCATGGTTGTTTCTGTTAACTCTGTAGGTGAAGCAGCGATGAGTAATGTTATCTAGAGGAAG_-_ATGGCTGACGCTGAGGATATTCAGCCACTCGTATGTGACAATGGAACTGGAATGGTTAAGGCTGGATTTGCAGGTGATGATGCACCAAGAGCAGTGTTCCCCAGTATTGTTGGTCGTCCCCGACATACTGGAGTTATGGTTGGCATGGGACAGAAAGATGCCTATGTGGGTGACGAGGCTCAGTCAAAAAGAGGTATCCTTACATTGAAATATCCTATTGAGCACGGTATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACATTTTACAATGAGCTTCGAGTTGCTCCAGAAGAACATCCTGTACTTCTTACTGAAGCCCCTCTGAATCCCAAGGCAAACAGAGAGAAGATGACTCAGATCATGTTTGAAACTTTCAATGTGCCTGCTATGTATGTTGCCATTCAGGCAGTTCTGTCTTTGTATGCAAGTGGTCGTACAACTGGTATTGTACTGGATTCTGGGGATGGTGTTAGTCACACAGTGCCAATTTATGAAGGATATGCACTGCCTCATGCTATACTTAGGTTGGATCTTGCGGGGAGAGATTTGACAGATGCATTAATGAAGATCTTGACAGAAAGAGGGTATTCATTCACCACCACTGCAGAGCGTGAAATTGTCCGTGATGTGAAGGAAAAGCTTGCATATGTGGCTCTTGACTATGAACAGGAGCTTGAGACAGCTAAAAGCAGCTCGTCCATTGACAAAAGTTATGAGCTTCCTGATGGGCAGGTGATCACCATTGGTGCTGAACGTTTTAGATGCCCTGAAGTATTGTTCCAGCCTTCTTTAATTGGGATGGAAGCTGCAGGTATCCATGAGACAACTTACAACTCCATCATGAAGTGTGATGTGGATATTAGAAAGGATCTATATGGAAACATTGTGCTTAGTGGTGGGTCCACTATGTTTCCTGGTATTGCTGACCGTATGAGCAAGGAAATCACTGCACTGGCTCCCAGCAGCATGAAAATCAAGGTGGTTGCACCTCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGTTCTATTTTGGCATCTCTCAGCACATTCCAACAGATGTGGATTGCAAAGGCTGAGTATGATGAATCTGGTCCTTCCATCGTCCACAGAAAATGTTTTTAA___GTTCAGTGCTTATGTTACTTTAGTGCATCGTGAAGATGGGTATTCTAGAGAATGTTTGCTTGAGATGATGGTGGCAATAGTGCTAAGGTCGAGATTCAGTTTATTTTTTATGCAAGGGTTTTAGAGAATATATCTGTGTAATTAGATGCTCTGAAGCATAGTTTTGTGGCTCTGTTCCACAGTTATTTGTGTTTGTATTGCTAGATGTGACCAGAAACCTATCTGTTTCTCATTTTTTTGATTTGAACCCTGTAATGTTATGCAAGAAGTAAATGTTGAACATTCTATTGAATGAATAGTGGG

Fln Alignment:

Contig17257___MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYVALDYEQELETAKSSSSIDKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Q9SPI7_______________MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYVALDYEQELETAKSSSSIDKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1043			25	75	0.996473
1637	8		91		0.999807
1639	8			91	0.999807
1640		86		8	0.999539
1657	10		90		0.999898
1671	86			13	0.999973
1724		12		87	0.992554
1725	14		85		0.993533
1757		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain