SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17252

Length: 2039 nt

UniGene Fasta

>sp_v3.0_unigene17252
ATGGGGGTTGCCCTCGGAAACCCCACTGTGATCGACGGTGCAGTTCATCTCCCGCGATCAGACGGTGGCGCTTTTCTCGGGGTTTCCTCTTCTCCGAATTGCTAAGGGATTGCCCTCATTTGGCTATGCAGCGCTCCCGCGGAGCCTGCTCTGATGCAGCCATTCCTTCAACAGCTCTGTTCTTTGGTTGTTCAGAAATAACTTGATGAAGTCTGCTCCGTTCCAACCTCACGGCCTGGCAGTGGTCCAAATTGTTTACAGGTTGTTGGGTTCGGTTTTGGCTCGACTTACTTGGTGGCGGCGACGCATCTACAGCGACGGACTTCACCTGTTACGGTCTTGAAGGATTCAAGAAATTCGAGTTGCGTGAAAGAATGGCCGGCTTAGATAATGGGGTAGGTAATGGTATCGTGTCTGTGAAATTCACCAAACTCTTTATTGATGGAAAATTTGTGGACGCAATTTCAGGGAAGACTTTTGAAACTTTGGATCCTCGAACAGGAGATTTGATAACGCGCGTCGCAGAAGGTGATAAGGAGGATGTGGATTTGGCTGTGAAGACGGCCCGGGAGGCTTTCGATAAGGGACCTTGGCCTCGAATGTCTGGCTATGAAAGGGGTCGCTTTCTGAATAGGTACGCTGATTTGGTAGAGCAGCATATAGATGAACTAGCACCTCTTGAAACCCTAGATAATGGAGAACCACTCACGCTTACTCGTGTCATTGTGACGGGGTGTATCCAGATTCTCAGATACTATGCAGGAGCGGCTGATAAAATACATGGGGAAACATTAAAAATGGGAGGGCAATATCAGGCATATACTTTGCATGAGCCTATTGGAGTGGTCGGTCAGATTATACCATGGAACTTCCCACTTTTCATGTTTTTCATGAAAATCTCTCCAGCTTTGGCTTGTGGATGCACTATAGTTATCAAACCTGCAGAACAAACTCCTCTAACTGCACTTTATTGTGCACATCTGGCCAAGGAGGCAGGGCTTCCATCTGGAGTTCTTAATGTGATAACTGGTTTTGGAGAAACGGCTGGTGCTGCAATAAGCAACCATATGGATATTGACAAGGTCGCCTTTACAGGGTCTACTGATATAGGTCGGGTTATCATGGTGGCTGCTGCCCAGAGCAACTTGAAACCTGTGACCCTTGAACTTGGGGGAAAATCTCCGTTGATTATCATGGATGACGCTGATATTGAGGAGGCCGTGAATCTTGCCCACAAGGCCATATTTTTTGGCAGTGGACAAGTATGCTGCGCAGGATCCCGGATATATGTTCAAGAGGGCATCCACGATAAATTTGTGAAGAGAGTAGTGGAAAGAGCGAAGAAACAGGTGGTCGGCGATCCTTTCAACCCAGAAGTTGACCATGGTCCTCAGATTGACAAGACACAATTTGAGAAAATATTAGAATACATTGAGCATGGGAAGCGAGAAGGAGCAAAACTATTGACAGGCGGTAGTCGCGTGGGTGAGAAAGGATTTTACATTGAACCAACCATTTTCTCCCATGTGCAGGAGGACATGAAGATTGGGAAAGAAGAAATATTTGGACCAGTCATGTCCATTTTCAAGTTCAGGACCATTGAAGAAGCCATAGAACTGGGCAATAAAACAATATATGGTTTAGCTGCTGGAATTGTGTCGAAGAATATAGATACAGTAAATAGGATTTCGAGATCTATTCGAGCAGGAGTGATTTGGGTTAACTGCTACCACGTAGTATTTCCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGGATCGGTAGAGAGCAGGGTCTCGATGTTCTTAAAAATTATTTGCAAGTCAAGTGTGTCATAACTCCTCTCCATGATTCACCTTGGTTGTAGAACTATGCTTTAACCTCTATCAAATGTGTTTGTCAAATGCTTCACAGCTTTATATAGTTAGGTTGAAGCTTCAATAAATTTTTGTATGTAATCACTTGAGTCAATGGTGTCATTTCCTTCACATGAATTCCTTATAATATTTATGTATCAAATTAGTCATTACATTTACAT

Ace file of the UniGene sp_v3.0_unigene17252

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytosolic aldehyde dehydrogenase n=1 Tax=Oryza sativa Japonica Group RepID=Q9LRE9_ORYSJ	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Betaine aldehyde dehydrogenase	-	-	1.31722e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aminobutyraldehyde dehydrogenase.	EC:1.2.1.19	-	2.083e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		2.083e-07	%
Sma3	beta-Alanine metabolism	00410		2.083e-07	%
Sma3	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	4.754e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		4.754e-18	%
Sma3	Pentose and glucuronate interconversions	00040		4.754e-18	%
Sma3	Ascorbate and aldarate metabolism	00053		4.754e-18	%
Sma3	Fatty acid metabolism	00071		4.754e-18	%
Sma3	Valine, leucine and isoleucine degradation	00280		4.754e-18	%
Sma3	Lysine degradation	00310		4.754e-18	%
Sma3	Arginine and proline metabolism	00330		4.754e-18	%
Sma3	Histidine metabolism	00340		4.754e-18	%
Sma3	Tryptophan metabolism	00380		4.754e-18	%
Sma3	beta-Alanine metabolism	00410		4.754e-18	%
Sma3	Glycerolipid metabolism	00561		4.754e-18	%
Sma3	Pyruvate metabolism	00620		4.754e-18	%
Sma3	Chloroalkane and chloroalkene degradation	00625		4.754e-18	%
Sma3	Propanoate metabolism	00640		4.754e-18	%
Sma3	Limonene and pinene degradation	00903		4.754e-18	%
Sma3	Metabolic pathways	01100		4.754e-18	%
Sma3	Biosynthesis of secondary metabolites	01110		4.754e-18	%
Sma3	Retinal dehydrogenase.	EC:1.2.1.36	-	1.178e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Retinol metabolism	00830		1.178e-16	%
Sma3	Metabolic pathways	01100		1.178e-16	%
Sma3	Betaine-aldehyde dehydrogenase.	EC:1.2.1.8	-	1.319e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260		1.319e-28	%

Source	Gene names
Sma3	ALD1; ALDH; ALDH10A8; ALDH10A9; ALDH1a; ALDH2; ALDH2A; ALDH2B; ALDH2B4; ALDH2B7; ALDH2C4; ALDH2a; ALDH2b; ALDH3; ALDH5A; Aldh; Aldh 2A; Aldh1; Aldh2a; Aldh2b; At1g23800; At1g74920; At3g24503; At3g48000; At3g48170; BADH; BADH1; BADH2; BADH4; BBD1; BBD2; Ba

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	-
Sma3	aldehyde dehydrogenase [NAD(P)+] activity	GO:0004030	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	betaine-aldehyde dehydrogenase activity	GO:0008802	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	GO:0016620	Molecular Function	-
Sma3	aminobutyraldehyde dehydrogenase activity	GO:0019145	Molecular Function	-
Sma3	coniferyl-aldehyde dehydrogenase activity	GO:0050269	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G24503.1	ALDH2C4, ALDH1A, REF1 aldehyde dehydrogenase 2C4 chr3:8919732-8923029 REVERSE LENGTH=501	61%
RefSeq	Arabidopsis thaliana	NP_566749.1	aldehyde dehydrogenase 2C4 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002324977.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLF5

Fln msg:

Fln protein: MAGLDNGVGNGIVSVKFTKLFIDGKFVDAISGKTFETLDPRTGDLITRVAEGDKEDVDLAVKTAREAFDKGPWPRMSGYERGRFLNRYADLVEQHIDELAPLETLDNGEPLTLTRVIVTGCIQILRYYAGAADKIHGETLKMGGQYQAYTLHEPIGVVGQIIPWNFPLFMFFMKISPALACGCTIVIKPAEQTPLTALYCAHLAKEAGLPSGVLNVITGFGETAGAAISNHMDIDKVAFTGSTDIGRVIMVAAAQSNLKPVTLELGGKSPLIIMDDADIEEAVNLAHKAIFFGSGQVCCAGSRIYVQEGIHDKFVKRVVERAKKQVVGDPFNPEVDHGPQIDKTQFEKILEYIEHGKREGAKLLTGGSRVGEKGFYIEPTIFSHVQEDMKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKNIDTVNRISRSIRAGVIWVNCYHVVFPDAPFGGYKMSGIGREQGLDVLKNYLQVKCVITPLHDSPWL*

Protein Length: 499

Fln nts: ATGGGGGTTGCCCTCGGAAACCCCACTGTGATCGACGGTGCAGTTCATCTCCCGCGATCAGACGGTGGCGCTTTTCTCGGGGTTTCCTCTTCTCCGAATTGCTAAGGGATTGCCCTCATTTGGCTATGCAGCGCTCCCGCGGAGCCTGCTCTGATGCAGCCATTCCTTCAACAGCTCTGTTCTTTGGTTGTTCAGAAATAACTTGATGAAGTCTGCTCCGTTCCAACCTCACGGCCTGGCAGTGGTCCAAATTGTTTACAGGTTGTTGGGTTCGGTTTTGGCTCGACTTACTTGGTGGCGGCGACGCATCTACAGCGACGGACTTCACCTGTTACGGTCTTGAAGGATTCAAGAAATTCGAGTTGCGTGAAAGA_-_ATGGCCGGCTTAGATAATGGGGTAGGTAATGGTATCGTGTCTGTGAAATTCACCAAACTCTTTATTGATGGAAAATTTGTGGACGCAATTTCAGGGAAGACTTTTGAAACTTTGGATCCTCGAACAGGAGATTTGATAACGCGCGTCGCAGAAGGTGATAAGGAGGATGTGGATTTGGCTGTGAAGACGGCCCGGGAGGCTTTCGATAAGGGACCTTGGCCTCGAATGTCTGGCTATGAAAGGGGTCGCTTTCTGAATAGGTACGCTGATTTGGTAGAGCAGCATATAGATGAACTAGCACCTCTTGAAACCCTAGATAATGGAGAACCACTCACGCTTACTCGTGTCATTGTGACGGGGTGTATCCAGATTCTCAGATACTATGCAGGAGCGGCTGATAAAATACATGGGGAAACATTAAAAATGGGAGGGCAATATCAGGCATATACTTTGCATGAGCCTATTGGAGTGGTCGGTCAGATTATACCATGGAACTTCCCACTTTTCATGTTTTTCATGAAAATCTCTCCAGCTTTGGCTTGTGGATGCACTATAGTTATCAAACCTGCAGAACAAACTCCTCTAACTGCACTTTATTGTGCACATCTGGCCAAGGAGGCAGGGCTTCCATCTGGAGTTCTTAATGTGATAACTGGTTTTGGAGAAACGGCTGGTGCTGCAATAAGCAACCATATGGATATTGACAAGGTCGCCTTTACAGGGTCTACTGATATAGGTCGGGTTATCATGGTGGCTGCTGCCCAGAGCAACTTGAAACCTGTGACCCTTGAACTTGGGGGAAAATCTCCGTTGATTATCATGGATGACGCTGATATTGAGGAGGCCGTGAATCTTGCCCACAAGGCCATATTTTTTGGCAGTGGACAAGTATGCTGCGCAGGATCCCGGATATATGTTCAAGAGGGCATCCACGATAAATTTGTGAAGAGAGTAGTGGAAAGAGCGAAGAAACAGGTGGTCGGCGATCCTTTCAACCCAGAAGTTGACCATGGTCCTCAGATTGACAAGACACAATTTGAGAAAATATTAGAATACATTGAGCATGGGAAGCGAGAAGGAGCAAAACTATTGACAGGCGGTAGTCGCGTGGGTGAGAAAGGATTTTACATTGAACCAACCATTTTCTCCCATGTGCAGGAGGACATGAAGATTGGGAAAGAAGAAATATTTGGACCAGTCATGTCCATTTTCAAGTTCAGGACCATTGAAGAAGCCATAGAACTGGGCAATAAAACAATATATGGTTTAGCTGCTGGAATTGTGTCGAAGAATATAGATACAGTAAATAGGATTTCGAGATCTATTCGAGCAGGAGTGATTTGGGTTAACTGCTACCACGTAGTATTTCCTGATGCTCCGTTTGGAGGGTACAAGATGAGTGGGATCGGTAGAGAGCAGGGTCTCGATGTTCTTAAAAATTATTTGCAAGTCAAGTGTGTCATAACTCCTCTCCATGATTCACCTTGGTTGTAG___AACTATGCTTTAACCTCTATCAAATGTGTTTGTCAAATGCTTCACAGCTTTATATAGTTAGGTTGAAGCTTCAATAAATTTTTGTATGTAATCACTTGAGTCAATGGTGTCATTTCCTTCACATGAATTCCTTATAATATTTATGTATCAAATTAGTCATTACATTTACAT

Fln Alignment:

Contig17252___VSVKFTKLFIDGKFVDAISGKTFETLDPRTGDLITRVAEGDKEDVDLAVKTAREAFDKGPWPRMSGYERGRFLNRYADLVEQHIDELAPLETLDNGEPLTLTRVI-VTGCIQILRYYAGAADKIHGETLKMGGQYQAYTLHEPIGVVGQIIPWNFPLFMFFMKISPALACGCTIVIKPAEQTPLTALYCAHLAKEAGLPSGVLNVITGFGETAGAAISNHMDIDKVAFTGSTDIGRVIMVAAAQSNLKPVTLELGGKSPLIIMDDADIEEAVNLAHKAIFFGSGQVCCAGSRIYVQEGIHDKFVKRVVERAKKQVVGDPFNPEVDHGPQIDKTQFEKILEYIEHGKREGAKLLTGGSRVGEKGFYIEPTIFSHVQEDMKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKNIDTVNRISRSIRAGVIWVNCYHVVFPDAPFGGYKMSGIGREQGLDVLKNYLQVKCVITPLHDSPWL
B8LLF5_______________VTVKYTKLFINGEFVDSVSGKTFETLDPRTGEAITRVSEAQKEDVDLAVKAARAAFDHGPWPRMSGFERGRILYKYADLVSQHGDELAALETFDNGKPLDMARILDIPYSVEVIRYNAGFADKIHGLTLKMSGQYQGYTLHEPIGVVGQMIPWNFPILTFFSKVSPALACGCTVVIKSAEQTPLTALYCAQLANEAGIPPGVLNVLSGFGETAGASISSHMDIDKISFTGSTQVGRLIMEAAAKSNLKPVTLEMGGKSPLIVMDDADVDKAVNIAHLAVYTNMGQVCLAGSRVFVQEGIYDEFVKKAVARAKQQVVGDPFQPGVQHGPQIDKMQFEKILKYIQYGKRDGANLVLGGNSLGNKGFYIEPTIFSDVEDDMQIAKEEIFGPIMSILKFKTIEEVIERGNKTIYGLGAGIITKDIDIANRLARSLRVGTVWINCYLVVGADVPLGGYKMSGIGREYGSYGLTNYLQVKCVISPLQHSPWL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1955			85	14	0.993533
1959	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain