SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17251

Length: 1924 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17251 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose 3,5-epimerase 1 n=27 Tax=Spermatophyta RepID=GME1_ORYSJ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G28840.1	GME GDP-D-mannose 3',5'-epimerase chr5:10862472-10864024 REVERSE LENGTH=377	91%
RefSeq	Arabidopsis thaliana	NP_001190417.1	GDP-mannose 3,5-epimerase [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002319639.1	predicted protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK78

Fln msg:

Fln protein: MGSTGADGLAYGAYTYEDLEREPYWPSEKVRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMENCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTLTSTDRFEMWGDGEQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQIEKEKVQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE*

Protein Length: 380

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGTGTGCGTTCTTCCGAGATTTGCACTCTGATAAGCTTGAGGGAGCTCTTCAAATCAAGGCTTGTTTTATATTTTCCTTTCTTTGAACATC_-_ATGGGAAGCACTGGAGCTGATGGACTGGCCTATGGGGCATACACCTATGAAGACCTGGAGAGAGAGCCATACTGGCCTAGTGAAAAAGTGAGAATTTCCATTACTGGAGCTGGGGGTTTCATTGCCTCCCATATTGCCAGGAGATTGAAGTCTGAAGGCCATTACATCATTGCCTCTGATTGGAAGAAGAACGAGCACATGACTGAGGATATGTTCTGCAATGAATTCCATCTTGTGGATCTCAGAGTTATGGAAAATTGTTTGGCTGTTACCAAAGGGGTTGACCATGTTTTTAACTTGGCTGCAGACATGGGCGGTATGGGATTCATTCAGTCTAATCATTCTGTTATCATGTACAACAACACGATGATCAGCTTCAACATGATTGAAGCTGCCAGAATCAATGGTGTTAAGAGGTTTTTCTATGCTTCTAGCGCATGTATTTATCCCGAATTCAAACAATTGGAGACCAACGTGAGCTTGAAGGAGTCTGATGCCTGGCCAGCTGAGCCTCAAGATGCCTATGGCTTGGAAAAACTTGCCACAGAAGAATTGTGCAAGCACTACAATAAGGACTTTGGTATAGAATGCCGGATAGGGCGTTTCCACAACATTTATGGTCCTTTTGGCACATGGAAGGGTGGACGTGAGAAGGCACCTGCTGCCTTTTGCAGGAAGACACTCACATCCACCGATAGGTTTGAAATGTGGGGAGATGGTGAGCAAACACGATCTTTTACATTCATTGATGAATGTGTGGAGGGTGTCTTGAGGTTGACTAAGTCAGACTTTAGAGAGCCAGTGAATATTGGCAGTGATGAAATGGTTAGCATGAATGAGATGGCTGAAATGGTGCTTAGCTTTGAGAACAAGAAGTTGCCAATACATCACATCCCTGGGCCAGAGGGTGTACGTGGTCGGAATTCTGATAATACATTGATCAAGGAAAAGCTAGGCTGGGCACCAACCATGAAGCTGAAGGATGGCTTGAGGATTACTTATTTCTGGATCAAGGAACAAATTGAGAAAGAAAAGGTGCAGGGAATTGATCTCTCCATCTATGGATCCTCTAAGGTGGTTGGCACGCAAGCCCCTGTTCAACTTGGATCTCTCCGTGCTGCGGATGGAAAGGAATGA___GGACAAATTCCTTGATCTCTAGTAGAATAAATAAATCAATGTTAACTCAGTTTATTATAAGCTGGTTAGCGGCTACATGCTTCTTGATTTGGTATCCAAAATTATTTTTCCTGCTATTGAAGTATCTCTGAAGGGTATATTCTGTTAATTGATGGGAATTTTTTTCCTGCTATTGAAGTATCTCTGAAGGGTATATTCTGTTAATTCATGGGAATTTTCGGAAAAAATCACATAGAGAGTATTTGGTGGACTGCTTCTGGTTAGAAGCAGTCATTTTCTTTTTAGTTCAAAAGTTCATCACCCTGTCTTTTTAGTTCGTCTTTTTAGTTCAAAAGTTCATCACCCTGTGGTGCTGATGGCGAGGATCATCTGATCCTCAAAAGTCTATGAAAATGCAACCATGATGATTTTATAGGAGGAGGTCACTGCAAAAGAATCTTTTGAGATGTCAAAGATACATTTAAGGATCTCTGCAATGTGTATCCAACTTTGCACAAACTTCTATATCTGATGTGCAATGCTACTTAACAATTTGAGCCATATCGGTGCTTGTTTAGTTGTGATATTTGGTTTTTAACTTAATGTCCTATGTCTAAAATCTTAGTAGCTGAATTATAATTTTTGTCTGTTTTGATGAATGTGGGTTAAACACACATTTGCAAAATTTATTTAC

Fln Alignment:

Contig17251___MGSTGADGLAYGAYTYEDLEREPYWPSEKVRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMENCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTLTSTDRFEMWGDGEQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQIEKEKVQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE
B8LK78_______________MGSTGADGVAYGAYTYEDLEREPYWPSEKVIISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMENCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTITSTDRFEMWGDGKQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEKEKVQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
559		66		33	0.997452
560	66			33	0.997452
561	66			33	0.997452
947		4		95	0.997218
1101			25	68	1.0
1392			90	10	0.90298
1395	87		12		0.992554
1439	85	14			0.993533
1451		28		71	1.0
1458		16	83		0.994512
1469		83	16		0.994512
1475			83	16	0.994512
1496			16	83	0.994512
1505		16		83	0.994512
1506		16	83		0.994512
1599	11		88		0.999952
1898		90		10	0.90298
1902		87		12	0.992554
1903	62	25		12	1.0
1906		75		25	0.996473
1907		75	25		0.996473
1908	25	75			0.996473
1909	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain