SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17244

Length: 1299 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17244

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic translation initiation factor eIF4E [Nicotiana tabacum]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translational initiation	GO:0006413	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Translation Initiation factor eIF- 4e	IPR001040	-	0.0	-
Sma3	Eukaryotic translation initiation factor 4E (eIF-4E), conserved site	IPR019770	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G18040.1	EIF4E, CUM1, AT.EIF4E1, eIF4E1 eukaryotic translation initiation factor 4E chr4:10016724-10018151 REVERSE LENGTH=235	65%
RefSeq	Arabidopsis thaliana	NP_193538.1	translation initiation factor eIF-4E [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002316746.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNZ6

Fln msg:

Fln protein: MAQEEPQNGETTLIERPIDGGKKHVLENSWTFWFDNPSGKSKSAAWGSSLRSVYTFRTVEDFWCLYNNVFLPSKLPAGADFHCFKAGIEPKWEDLTCAHGGKWTATNTRGGKAGLDQLWLNTLLAMIGEQFDEGDEICGAVASMRARQEKIALWTRTATNEAAQMSIGKQWKEFLDYNEKIHYMFHEDAKKDKSARNRYTI*

Protein Length: 203

Fln nts: ATGGGGGAATCTAAGGTTGGGGTTTCGGGCGCTTAAAAGTGTTTATTTGTGTAAGGGGCGAAGTCGAGGGATACAAATAGGGCCTATCCCTGGGCAAATGGTACTTTGTGTTAGTAATTCTAACACTACTAGGGCTTTATTTCAAGGGTGCGACAAGA_-_ATGGCGCAGGAAGAACCCCAGAACGGTGAAACTACTCTGATAGAGAGGCCTATTGATGGCGGGAAGAAGCATGTATTGGAGAACTCATGGACTTTCTGGTTCGACAACCCTTCCGGGAAATCGAAGTCGGCAGCATGGGGCAGCTCACTTCGTTCCGTCTATACCTTCAGGACGGTTGAAGATTTCTGGTGTTTATACAACAACGTGTTTCTGCCAAGCAAGCTGCCCGCAGGGGCAGATTTCCACTGCTTTAAAGCGGGTATAGAGCCCAAGTGGGAAGACCTTACATGTGCTCACGGAGGAAAGTGGACTGCCACTAACACCCGAGGCGGCAAGGCTGGATTGGATCAACTATGGCTTAACACTCTGTTGGCCATGATCGGTGAACAATTTGACGAAGGCGATGAAATTTGTGGTGCTGTGGCTAGTATGAGAGCTAGACAAGAAAAAATTGCCTTGTGGACCAGAACTGCCACCAATGAAGCTGCCCAGATGTCAATTGGTAAGCAGTGGAAAGAGTTCCTCGACTATAACGAAAAGATCCATTACATGTTCCATGAAGATGCAAAGAAGGATAAATCTGCAAGAAATAGATATACAATATAA___AGTTAAATTTTGAAGTATCTATTTTGCCTTTGCACCTGTGAGAAACCATATATGCACTGGGAAATGGTTCGGCACTGACTGGAGTGTGTTGATACATTCTTATAAGAAAGATAAAGGCAGCTATAGTGTGTTAGTTATTGTCAACTGTCCATGATCCAACGTTGTCTGCGAAAAGTGTATTTTTATGGAAGACACGTTTATTTAGTATCTGTTTTCCCTTTTTAATATTACAATCATAGTACGTGTTGTAATTTGTCACGTCACCTCATTTAATATTTTGAATGTTGTGTACCAACCGTGAGGACACGAGGATACTGTTATAAGAGTTAAGTTGCATTTGGAAAATATTAATACGGTGGGGACTGTGGTAGCTGTAGCAAAAGTACATTTTCTTTTGTGCAGCGAGAGAAGTTAATGAGTTTTATTGCTAGGGACAGGAATAAATTCCACATAATTTTATCTAGCTCTTAACCTGGATGCATCTTTGCCAATGTGTACATCGTTGTGCAGGAATACAATTTTTTCCATTTTCTAG

Fln Alignment:

Contig17244___MAQEEPQNGETTLIERPIDGGKKHVLENSWTFWFDNPXXXXXXXXXXXXLRSVYTFRTVEDFWCLYNNVFLPSKLPAGADFHCFKAGIEPKWEDLTCAHGGKWTATNTRGGKAGLDQLWLNTLLAMIGEQFDEGDEICGAVASMRARQEKIALWTRTATNEAAQMSIGKQWKEFLDYNEKIHYMFHEDAKKDKSARNRYTI
A9NNZ6_______________MAQEEPQNGEVKLIERPIDGGKKHPLENAWTFWFDNPSGKSKSAAWGSSLRSVYTFKTVEDFWCLYNNVFLPSKLPSGADFHCFKSGIEPKWEDLICAHGGKWTATNTRGGKAGLDQLWLNTLLAMIGEQFDEGDEICGAVASVRARQEKIALWTRTATNEAAQMSIGKQWKEFIDYNEKIQYMFHEDAKKDKAARNRYTL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
930		3		96	0.98536
967		2		97	0.972772
1110	96		3		0.987242
1120	1		93		0.999969
1230		74		25	1.0
1240	3		90		0.996531
1261		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain