SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17219

Length: 1112 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17219

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative RNA-binding like protein [Oryza sativa Japonica Group]	-	-	5.0e-32	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	RNA-binding like protein	-	-	2.032e-09	-

Source	Gene names
Sma3	AT4g36960; At4g36960; C7A10.400; GSVIVT00019496001; Os01g0945800; OsI_05159; OsI_19737; OsJ_04743; P0614D08.35; P0660F12.29; PHYPADRAFT_156290; POPTRDRAFT_651076; POPTRDRAFT_832343; RCOM_1408480; VITISV_011315;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G36960.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr4:17427349-17429589 FORWARD LENGTH=379	4.0e-34	48%
RefSeq	Arabidopsis thaliana	NP_001154290.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	5.0e-34	48%
RefSeq	Populus trichocarpa	XP_002310138.1	predicted protein [Populus trichocarpa]	1.0e-37	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC6

Fln msg: your sequence is shorter than subject: 240 - 409

Fln protein: KGGTGKAVGKTSFRGGYGAYNAYINAATRYGALGSATLYDHPSSGFRDGYASEIGSGYGSGNSWPLHGTGGMIGGSSYGMADRGAGYGSGGFSGPPPRGMGKKIFVGRLSQEATAGDLRRYFSNFGTVVDVYVPKDARRSGHRGFGFVTFAEDGVADRVARRSHEILGQQVAIDSATPPDDDHYVDDGLPPPAGGIGGPLRGPPSYSGGGYDWGYGGSGIGPGPAGGRSSRMDYRYRPY*

Protein Length: 241

Fln nts: CAAAGGAGGAACCGGCAAAGCAGTGGGCAAAACCAGTTTCCGTGGGGGGTATGGTGCATACAATGCATATATCAATGCTGCAACCCGGTATGGGGCATTGGGCTCTGCTACACTGTATGACCATCCGAGCTCAGGATTCAGAGATGGTTATGCATCAGAAATAGGAAGTGGCTATGGCAGTGGAAACTCATGGCCTCTACATGGAACCGGTGGTATGATTGGAGGATCATCCTATGGCATGGCTGATCGTGGTGCAGGGTATGGTTCGGGAGGTTTTTCTGGCCCACCACCACGAGGCATGGGCAAGAAGATTTTTGTTGGAAGGCTTTCACAAGAGGCAACTGCCGGAGATCTTCGTCGATATTTCAGCAATTTTGGCACTGTTGTAGATGTGTATGTGCCAAAGGATGCAAGGAGGTCGGGGCATAGAGGCTTTGGTTTTGTGACATTTGCTGAGGATGGAGTAGCAGATCGTGTGGCACGAAGGTCACATGAAATTCTTGGCCAGCAGGTGGCAATAGACTCTGCTACTCCGCCAGATGACGATCATTATGTTGATGATGGCCTACCTCCACCAGCAGGTGGGATTGGTGGTCCTTTAAGGGGTCCTCCATCTTATTCTGGAGGCGGCTATGATTGGGGTTATGGTGGCTCTGGGATTGGACCTGGCCCAGCAGGGGGTCGCTCTTCACGCATGGACTACAGATACCGGCCTTACTAA___GTATAATGGTTTTTCATTTTTTCCATTACAGGTTAATTGAGCTGCACAACCATGATGCTAACTGAATTAATCTAAAATGACAATTATGTGCTAGTTTTAGCATTTATAGAAGTCACTGCTTTTCCTTGGATACATAAAAGATACTCGGTACTTATTTTCATCGGCATACTTATTTTCTATGTCAGACCTATGCAATTTATGGTTAATCTGAATACAAGCACCCAGCGTTATTTCATGTTATTTTTGGATTCTTTTGAAATCAATATGGTGTTATGTCTGAATACGAGAGCATTAAGCTTCCGGGCATGTCATGTTTGTGTGCTGTTTTGAAACCATTATCATGTACTTTGTTTTTATTGTTTAGAACTGTGTGCATTAAAGGTTTTTATTT

Fln Alignment:

Contig17219___TRYGALGSATLYDHPSSGFRDGYASEIGSGYGSGNSWPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKIFVGRLSQEATAGDLRRYFSNFGTVVDVYVPKDARRSGHRGFGFVTFAEDGVADRVARRSHEILGQQVAIDSATPPDDD-HYVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDYRYRPY
B8LKC6_______________TRYGALGSATLYDHPSSGFRDGYASEVGGGYGSGNSWPPHGAGGMIGGSSYGMADRGAGYGPGSFSGPPPRGMGKKIFVGRLSQEATAGDLRRYFSNFGTVVDVYVPKDARRSGHRGFGFVTFAEDGVADRVSRRSHEILGQQVAIDSATPPDDDIHYVDDGIPPPAGGIGGPLRGPASYSGGGYDWGYGSSGIGPGPTGGRASRMDYRYRPY

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
564		6		93	0.999364
565	10		90		1.0
566		3	90	6	0.997952
567	3	90		6	0.997952
640	20			80	1.0
641		20	80		1.0
642	20		80		1.0
643			80	20	1.0
644			80	20	1.0
770	16	83			0.994512
771	83			16	0.994512
772	88		11		0.923564
773		88		11	0.923564
925		10	89		1.0
950		4	95		0.994598
962	4	9		85	0.999726
1004	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain