SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17208

Length: 2234 nt

UniGene Fasta

>sp_v3.0_unigene17208
GAGTTCGCTAACTTTAGACTAGCGGTTATTCAAACAGGAAAATAATTGTGAGCCACAAGAATTGGAGTAGAGGTCCGCGGTCACGTCTCTGCCCTTTATATAGAGTCACCCCTTCGCAATGGGACATAACCAAATTGTTCGAGTCTTCGATTGCAGCATACTTGCGATACGGGATTTCTTCGTTTGTGATTTTCGTGAGGGGTTTTGCTGCCTCGTCTTGGTTTCCTGAGGGATAGCTGAGGGATTTACTGGATCGGAGTCGTTTCCAGGCTCAAATCATCAGTTTTATTATACAAAAGGCTGAATGTTCTGATGGAGACCAAAGGCGGTAAAAAGCAGTCCAGTAGTAATTGCCCTCAGTACGAAACCCCCTTAGGCTACAAGATTGAAGACGTTCGACCAAACGGTGGCATCGAGAAATTCCGCAGCGCTGCATACTCCAACTGCGTGCGAAAGCCATCCTGATATCTCGTGGGTGGATTCGTAGAGTAGGAATTGTAGGGTTAGGTGTTTTTCAATAAGTTCAGTCATCCTGCTAGGAGCTGATCTGCAGCTTCGCTGCACGGCTGTTAGATTGGCTCCCCACTCCTCTGGAGTGGCTATTTTTCCCCCAACGCTTTAGGAATTTCTTTCATAGTCTGTTTTTTTCTTCTATATCTGATCTGCATAGGCTGTAACATTTTGTTTGCATTTGAAAATGGGTGTGGCCTGTGGAGATTCTGTTGCTCCCATGACTGCAATTGGGTTTGAAGGATTTGAAAAGCGACTAGAGGTCGAGTTCTTTGCACCTTCAATTTTCAATGATCCAGAAGGAAGAGGTTTGAGGGCACTCACTCGAGCTGATTTGGATGAAATGCTGGATGCAGCACAATGCACAATTGTTTCTGAGCTCTCTAATGAGCATCTCGATTCGTATGTCCTGTCTGAATCGAGTCTGTTTGTTTATCCGTATAAGCTTGTTCTGAAGACTTGTGGGACTACCAAGCTTCTTCTTTCCATTCCTCTGATTCTGAAGAACGCAAGCAAGTTGTCTCTCTCTGTCAAAAATGTTAAATACACTCGAGGGACATTTATCTTTGCTGGAGTCCAGCCATTTCCTCATCGTAGCTTCGGCGAGGAAATATCTTACTTGGATAAATACTTTGGAAAGCTTGGTTCTGGAGGCAAGGCATATGTGATGGGGGATTCTGGGAAAGCGTATAATTGGCATGTCTACTCTGCTAGTGCTGTGGATACTTCATTTGAGGGAAATGCTCCTCCCGTTTATACATTAGAGATGTGCATGACACAACTGGACCGCAAACAGGCGTCTGTCTTTTACAAGGATACCTCCAAGTCTGCAATGGAGATTACACTTAATTCTGGAATAAGCGATATTCTTCCTGAGTCTAAGATTTGTGACTTTCAGTTTGATCCATGTGGGTATTCCATGAATGCTCTTGAAGGAGCAGCTATTTCCACTATTCATGTAACGCCAGAGGATGGTTTCAGTTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGTGACCTTGAAGCACTGGTGGAGAGGGTATTAAGCTGTTTTAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAGAATGGCCACTAACGAGTCTCCCAGGTCTACTCTGCCATTGCTTGCTTGGGAAGAGGAAAGTGAAGAAAATGGCTGTTTGCAATTGACCGAAAAGGAAAAGAAGCTTCTCAAATGTGAAATGCAGGAAGGTTGAGAGATGCACATTGTTCTGGCAGAATCTACCGCTGTCAATCAAGACGGTTCTACTGCAAGTATTGAGTCTAGTATTTAGATTGGAATCAACAATAAAGTGGGTGTAGTGCAGTTTAATATCTTTTGCGTTGGGGGAGGGTTGTAGCTTAGGATGATATGTTTTTCAATAAATATATTTGGGCATAGAGTCCAATTTGTCATTGTGTTGGGGAGGGTTGTGGCGTAGGGTGATATATTTCCTTTTGTAACAGGATGTGTGTCTCACTTGAATGGATGATATGTTTTCAAATAAAATATAGTTGGGCGTATAGTCCAATTTTTCATTCTGTGTTGGGGAGGATTGTGGCGTAGGATGATATATTTCCTTTTGTAACAGG

Ace file of the UniGene sp_v3.0_unigene17208

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI	-	-	93%
FL-Next	sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	S-adenosylmethionine decarboxylase	IPR001985	-	-
Sma3	S-adenosylmethionine decarboxylase subgroup	IPR018167	-	-
Sma3	S-adenosylmethionine decarboxylase, core	IPR016067	-	-
Sma3	S-adenosylmethionine decarboxylase, conserved site	IPR018166	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02470.1	SAMDC S-adenosylmethionine decarboxylase chr3:510223-511323 FORWARD LENGTH=366	60%
RefSeq	Arabidopsis thaliana	NP_001154585.1	S-adenosylmethionine decarboxylase 1 beta chain [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002329311.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G8C847

Fln msg:

Fln protein: MGVACGDSVAPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEHLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKAYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSKSAMEITLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKHCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENGCLQLTEKEKKLLKCEMQEG*

Protein Length: 388

Fln nts: GAGTTCGCTAACTTTAGACTAGCGGTTATTCAAACAGGAAAATAATTGTGAGCCACAAGAATTGGAGTAGAGGTCCGCGGTCACGTCTCTGCCCTTTATATAGAGTCACCCCTTCGCAATGGGACATAACCAAATTGTTCGAGTCTTCGATTGCAGCATACTTGCGATACGGGATTTCTTCGTTTGTGATTTTCGTGAGGGGTTTTGCTGCCTCGTCTTGGTTTCCTGAGGGATAGCTGAGGGATTTACTGGATCGGAGTCGTTTCCAGGCTCAAATCATCAGTTTTATTATACAAAAGGCTGAATGTTCTGATGGAGACCAAAGGCGGTAAAAAGCAGTCCAGTAGTAATTGCCCTCAGTACGAAACCCCCTTAGGCTACAAGATTGAAGACGTTCGACCAAACGGTGGCATCGAGAAATTCCGCAGCGCTGCATACTCCAACTGCGTGCGAAAGCCATCCTGATATCTCGTGGGTGGATTCGTAGAGTAGGAATTGTAGGGTTAGGTGTTTTTCAATAAGTTCAGTCATCCTGCTAGGAGCTGATCTGCAGCTTCGCTGCACGGCTGTTAGATTGGCTCCCCACTCCTCTGGAGTGGCTATTTTTCCCCCAACGCTTTAGGAATTTCTTTCATAGTCTGTTTTTTTCTTCTATATCTGATCTGCATAGGCTGTAACATTTTGTTTGCATTTGAAA_-_ATGGGTGTGGCCTGTGGAGATTCTGTTGCTCCCATGACTGCAATTGGGTTTGAAGGATTTGAAAAGCGACTAGAGGTCGAGTTCTTTGCACCTTCAATTTTCAATGATCCAGAAGGAAGAGGTTTGAGGGCACTCACTCGAGCTGATTTGGATGAAATGCTGGATGCAGCACAATGCACAATTGTTTCTGAGCTCTCTAATGAGCATCTCGATTCGTATGTCCTGTCTGAATCGAGTCTGTTTGTTTATCCGTATAAGCTTGTTCTGAAGACTTGTGGGACTACCAAGCTTCTTCTTTCCATTCCTCTGATTCTGAAGAACGCAAGCAAGTTGTCTCTCTCTGTCAAAAATGTTAAATACACTCGAGGGACATTTATCTTTGCTGGAGTCCAGCCATTTCCTCATCGTAGCTTCGGCGAGGAAATATCTTACTTGGATAAATACTTTGGAAAGCTTGGTTCTGGAGGCAAGGCATATGTGATGGGGGATTCTGGGAAAGCGTATAATTGGCATGTCTACTCTGCTAGTGCTGTGGATACTTCATTTGAGGGAAATGCTCCTCCCGTTTATACATTAGAGATGTGCATGACACAACTGGACCGCAAACAGGCGTCTGTCTTTTACAAGGATACCTCCAAGTCTGCAATGGAGATTACACTTAATTCTGGAATAAGCGATATTCTTCCTGAGTCTAAGATTTGTGACTTTCAGTTTGATCCATGTGGGTATTCCATGAATGCTCTTGAAGGAGCAGCTATTTCCACTATTCATGTAACGCCAGAGGATGGTTTCAGTTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGTGACCTTGAAGCACTGGTGGAGAGGGTATTAAGCTGTTTTAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAGAATGGCCACTAACGAGTCTCCCAGGTCTACTCTGCCATTGCTTGCTTGGGAAGAGGAAAGTGAAGAAAATGGCTGTTTGCAATTGACCGAAAAGGAAAAGAAGCTTCTCAAATGTGAAATGCAGGAAGGTTGA___GAGATGCACATTGTTCTGGCAGAATCTACCGCTGTCAATCAAGACGGTTCTACTGCAAGTATTGAGTCTAGTATTTAGATTGGAATCAACAATAAAGTGGGTGTAGTGCAGTTTAATATCTTTTGCGTTGGGGGAGGGTTGTAGCTTAGGATGATATGTTTTTCAATAAATATATTTGGGCATAGAGTCCAATTTGTCATTGTGTTGGGGAGGGTTGTGGCGTAGGGTGATATATTTCCTTTTGTAACAGGATGTGTGTCTCACTTGAATGGATGATATGTTTTCAAATAAAATATAGTTGGGCGTATAGTCCAATTTTTCATTCTGTGTTGGGGAGGATTGTGGCGTAGGATGATATATTTCCTTTTGTAACAGG

Fln Alignment:

Contig17208___MGVACGDSVAPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEHLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKAYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSKSAMEITLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKHCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENG
G8C847_______________MGVACGDSVVPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEHLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKGYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSNSAMEITLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGSSYASFEAMGYNPKDCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENG

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
569		97		2	0.944212
612			2	92	0.992495
613		86		2	1.0
633	5			94	0.998397
634	5	94			0.998397
1082	16			83	0.994512
1083		16		83	0.994512
1084	16		83		0.994512
1085		83		16	0.994512
1089	80		20		0.995493
1110		80		20	0.995493
1315		33		66	0.997452
1453	14		85		0.993533
1482	11			88	0.923564
1926	10			90	0.90298
1927		10	90		0.90298
1929			90	10	0.90298
1942	88			11	0.923564
2006	75		25		0.996473
2009			25	75	0.996473
2022	11			88	0.923564
2023		11		88	0.923564
2041	10		90		0.90298
2047	90			10	0.90298
2135	16		83		0.994512
2138			83	16	0.994512
2152	40			60	1.0
2158	20			80	0.995493
2162	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain