SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17207

Length: 2163 nt

UniGene Fasta

>sp_v3.0_unigene17207
ATGGCAAAAGCACAACTAACAACGCAGAGTACGAGCCGGTGGCAAAGATCTAAGCACGCTGCAATTTCTCTGAGTCTTCGTGTTATATATATTGCTGTAAGACCTGGGATCAAACCCAGGCACTCGCATCGGCTTGAAGATCGTCGAAAAAGCCTTTTCATAGTGTGAGGAATCGCCCACTGTGGAGGAGAATTGTCCGTAGTTCACGTCAGCGGCTGGCTGAGCGTTCCACGCTACTTGGCTGGTGCTCCGACTTCCTGGTATTGAAGAGCACAATGGCATCTGCAACACTGTTCATGAATTCAGTTTCTGCCTCTGGGGTTCTAGCACCCATTTGTGAAACTCGTCCATCTGTTGCTGGACTCCAGGGCCAGGCTTCTGCAGTTAGCTTTCCTATGAAGAAGGTTTTCAAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCCTGTGAATCTGAGTCATCCTTCTTTAGTCATGAGACAAATGCGGTTCTTTGGTCGTCTGCTAGGAGGCCAAGGTCAGCAGAAAACGGACAGACTGTTCAAAAGGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCTGGAGGGATTGGGCAGCCTGTCTCACTGTTGATTAAAATGTCTCCTCTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGTGTTGCAGCAGATCTTAGCCACTGCAACACTCCAGCACAGGTTCTAGATTTTACTGGGCCAGCTGAACTGGCAAATTGTTTGAAGGGTGTAGATGTGGTGGTCATCCCTGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATTGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACAGTCCTAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACTGTACCTATTGCTGCTGAGGTGCTGAAGCAGAAAGGCGTATATGATCCTAAAAAGCTGTTTGGTGTAACTACCCTGGACGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATTGATGTTGACGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACCAAGCCTTCTGTAACATTCACGCAGGAGGAGATTGAACAGCTTACAGTCAGAATTCAGAATGCTGGAACTGAAGTTGTGGAAGCAAAAGCGGGCGCTGGATCTGCAACTCTCTCCATGGCTTATGCTGCTGCTAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCTGATGTGTATGAGTGTTCTTATATTCAATCTGAACTGACAGAATTACCTTTCTTTGCTTCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCGGTGATTGCCTCAGACCTTGAGGGGCTGACTGAGTATGAACAGAAATCTCTAGAAGCTCTTAAGCCAGAGTTGAAGGCAAGCATTGAAAAGGGCATTGCTTTTGCAAACAAGTAAGCACCAGTTGGTAGTGCCGTTTGAAGGCATTCCATTTAACTTGAATTGTAGGACAAATAAGATGAGCAACATGCACTACGGCTTTAGGGCGCTGTCGTTTTTGCAGTTTAGGCATATATTTTTGCATTTTGGTACTAAAGACAATTCCAAGCTCTTTTGAGGAAAGACGGAGTACTGACGGTTATCTACTTTTCCATGCCCTTAGCTTTTCCAGAGGAATTCTCAATAAGGTCTTTATTGATCTAATGTTTATTTCACCAGAAACTGCTAATACAAGTTCCCAATACCACATGTTTTTAGGTTGTTGCAAATAGGCATAGATTTTGCATATTGATACAAAGACAATTTCCAGTCCTTTTGAGGAAAGACAGAAGGTTGACTTTCTTATGCGGGCTTGGTGATTCACTATTATTTACTTTCTCATGTCCTGAGCTTTTACGGAGAAATTCTCAGTAAGGTCTTTATTGATTTAATGTTTATTTTGCTAGAAACTGCGAATACAAGTCCCCCGTACCACATGTTTTTTGGTTGTTGCAAAATCGGCAGTGTTTTTGTTTGGTATCTTCTATTTTTATTGAACATATCCTAAATATTGCAGGGGAGTTTGTCTTCACTATGGAGGCAAATTCAAAATTATTTTGTATATATA

Ace file of the UniGene sp_v3.0_unigene17207

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=2 Tax=Pinaceae RepID=C9EIK5_9CONI	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	L-malate dehydrogenase activity	GO:0030060	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	malate metabolic process	GO:0006108	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G47520.1	MDH malate dehydrogenase chr3:17513657-17514868 FORWARD LENGTH=403	78%
RefSeq	Arabidopsis thaliana	NP_190336.1	malate dehydrogenase [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002330960.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUM0

Fln msg:

Fln protein: MASATLFMNSVSASGVLAPICETRPSVAGLQGQASAVSFPMKKVFKTFSGLKAGVACESESSFFSHETNAVLWSSARRPRSAENGQTVQKAGQIRASTFKVAILGAAGGIGQPVSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK*

Protein Length: 414

Fln nts: ATGGCAAAAGCACAACTAACAACGCAGAGTACGAGCCGGTGGCAAAGATCTAAGCACGCTGCAATTTCTCTGAGTCTTCGTGTTATATATATTGCTGTAAGACCTGGGATCAAACCCAGGCACTCGCATCGGCTTGAAGATCGTCGAAAAAGCCTTTTCATAGTGTGAGGAATCGCCCACTGTGGAGGAGAATTGTCCGTAGTTCACGTCAGCGGCTGGCTGAGCGTTCCACGCTACTTGGCTGGTGCTCCGACTTCCTGGTATTGAAGAGCACA_-_ATGGCATCTGCAACACTGTTCATGAATTCAGTTTCTGCCTCTGGGGTTCTAGCACCCATTTGTGAAACTCGTCCATCTGTTGCTGGACTCCAGGGCCAGGCTTCTGCAGTTAGCTTTCCTATGAAGAAGGTTTTCAAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCCTGTGAATCTGAGTCATCCTTCTTTAGTCATGAGACAAATGCGGTTCTTTGGTCGTCTGCTAGGAGGCCAAGGTCAGCAGAAAACGGACAGACTGTTCAAAAGGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCTGGAGGGATTGGGCAGCCTGTCTCACTGTTGATTAAAATGTCTCCTCTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGTGTTGCAGCAGATCTTAGCCACTGCAACACTCCAGCACAGGTTCTAGATTTTACTGGGCCAGCTGAACTGGCAAATTGTTTGAAGGGTGTAGATGTGGTGGTCATCCCTGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATTGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACAGTCCTAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACTGTACCTATTGCTGCTGAGGTGCTGAAGCAGAAAGGCGTATATGATCCTAAAAAGCTGTTTGGTGTAACTACCCTGGACGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATTGATGTTGACGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACCAAGCCTTCTGTAACATTCACGCAGGAGGAGATTGAACAGCTTACAGTCAGAATTCAGAATGCTGGAACTGAAGTTGTGGAAGCAAAAGCGGGCGCTGGATCTGCAACTCTCTCCATGGCTTATGCTGCTGCTAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCTGATGTGTATGAGTGTTCTTATATTCAATCTGAACTGACAGAATTACCTTTCTTTGCTTCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCGGTGATTGCCTCAGACCTTGAGGGGCTGACTGAGTATGAACAGAAATCTCTAGAAGCTCTTAAGCCAGAGTTGAAGGCAAGCATTGAAAAGGGCATTGCTTTTGCAAACAAGTAA___GCACCAGTTGGTAGTGCCGTTTGAAGGCATTCCATTTAACTTGAATTGTAGGACAAATAAGATGAGCAACATGCACTACGGCTTTAGGGCGCTGTCGTTTTTGCAGTTTAGGCATATATTTTTGCATTTTGGTACTAAAGACAATTCCAAGCTCTTTTGAGGAAAGACGGAGTACTGACGGTTATCTACTTTTCCATGCCCTTAGCTTTTCCAGAGGAATTCTCAATAAGGTCTTTATTGATCTAATGTTTATTTCACCAGAAACTGCTAATACAAGTTCCCAATACCACATGTTTTTAGGTTGTTGCAAATAGGCATAGATTTTGCATATTGATACAAAGACAATTTCCAGTCCTTTTGAGGAAAGACAGAAGGTTGACTTTCTTATGCGGGCTTGGTGATTCACTATTATTTACTTTCTCATGTCCTGAGCTTTTACGGAGAAATTCTCAGTAAGGTCTTTATTGATTTAATGTTTATTTTGCTAGAAACTGCGAATACAAGTCCCCCGTACCACATGTTTTTTGGTTGTTGCAAAATCGGCAGTGTTTTTGTTTGGTATCTTCTATTTTTATTGAACATATCCTAAATATTGCAGGGGAGTTTGTCTTCACTATGGAGGCAAATTCAAAATTATTTTGTATATATA

Fln Alignment:

Contig17207___MASATLFMNSVSASGVLAPICETRPSVAGLQGQASAVSFPMKKVFKTFSGLKAGVACESESSFFSHETNAVLWSSARRPRSAENGQTVQKAGQIRASTFKVAILGAAGGIGQPVSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK
A9NUM0_______________MASATSFMSSVSVSGFLAPICETRPSGAGLQ--ASAVSFPTKKVFNTFSGLKAGVACESEASFFSHETNAVLWSSVSRPRSAENRQIVPSAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQILDFTGPAELANSLKDVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQDEIEQLTIRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKKGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
302		10		90	0.90298
773		10		90	0.90298
774	10		90		0.90298
776	90			10	0.90298
787	11			88	0.923564
791		88		11	0.923564
802		16		83	0.994512
820		20		80	0.995493
877		80		20	0.995493
938			75	25	0.996473
1268	96			3	0.987242
1359	8			91	0.999807
1370		10	89		0.999919
1401	10		90		0.90298
1405			10	90	0.90298
1406			10	90	0.90298
1426		11		88	0.923564
2047		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain