SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17204

Length: 1284 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17204

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NKA9_PICSI	-	-	97%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G22630.1	PBD1, PRCGB 20S proteasome beta subunit D1 chr3:8009709-8010774 REVERSE LENGTH=204	78%
RefSeq	Arabidopsis thaliana	NP_193216.1	proteasome subunit beta type-2-B [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002314682.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKA9

Fln msg:

Fln protein: MECVFGLVGDGFALIAGDTSAVQSIVVQKTSEDKIMILDSHKLLGASGESGDRVQFTEYIQKNVHLYQFRNGIPLSTAATANFTRGKLATALRKNPYSVNLLLAGFDKDVGPSLYYIDYIATLHKVDKVAFGYGAYFSLSMMDRYYHKGMSVEEAIEFADKCILEIRSRLIVAPPNFVIKIVDKDGAREYAWRKTIEDASEPPATELLPAVEVQS*

Protein Length: 217

Fln nts: CGTCGTGACCTTGGCTAGCACTCACGGTTCCTTTATGTTCAAGCAAGCGCAAACAGGAGAGATCTGCAAGGATTTGAAGCGGAGTTTGGAGTAATCGGAGGCAGTGAGTGAGCAAACCAGAGAGGAGAATAACAGAGGC_-_ATGGAGTGTGTATTCGGGTTGGTCGGGGATGGCTTCGCTCTGATAGCAGGCGACACCTCGGCAGTGCAGAGTATTGTGGTGCAAAAGACATCTGAGGACAAGATAATGATTCTCGATTCACACAAGCTTTTGGGTGCAAGCGGCGAGAGTGGTGATAGGGTACAATTTACCGAGTATATTCAGAAAAATGTTCATCTGTATCAGTTTCGTAATGGCATTCCGCTGTCTACGGCAGCTACTGCCAACTTTACCAGGGGCAAACTTGCGACAGCTCTGAGAAAGAACCCGTATTCTGTGAATTTACTTTTGGCGGGATTTGACAAGGATGTTGGTCCATCACTGTACTACATTGACTACATTGCAACTCTTCACAAGGTTGATAAAGTAGCATTTGGATATGGAGCATATTTTTCTTTATCAATGATGGACAGATATTATCACAAAGGGATGTCTGTGGAGGAGGCAATAGAGTTTGCTGACAAATGTATTTTAGAAATAAGGTCCAGATTGATAGTTGCACCTCCTAATTTTGTCATCAAGATCGTTGACAAGGATGGGGCAAGAGAGTATGCATGGCGTAAAACTATTGAGGACGCAAGTGAGCCCCCCGCAACAGAGTTGTTACCAGCTGTGGAAGTTCAAAGCTAA___ATGATTGGTTTATAATTGAAATAGCATTGTTACCCTAAACACATTTTTATGCTAGTTTCCAATATCTAAGAGTTCCTTTGCAGCAAGATTGGAAATTTTGCTTTTGGTACACTTTCAAAACAAATTAATAATCTGATATAGCTTTTAAATCTCCAGAAACCAGAATTATCAGTCTGGAAATTTTATAAGTGATCGGATTATTTCATGTCAGTTTCTTCTGCATTTTTAAGTTTAGATTTTTAAGATTTCCGTTATGAGCACATTTTCAAGCAGAGCTTCATTGTATTTGAGAAAGCATTCATTTTGTTCCTGTCTTTCTGAGTTGCATTACATGTTAATGTGGATGCCGGATTAAAGATCTGGAGCTAAGATACCAATTGACTAAGAAATTAGAGGTCATCTAGGATTTTGGATGGTGCATTATTATCTTGATTACTTCATGTTTAACTTTCCTGGATTGGCCTTGTCGACTTTGAATATTGATATTCTGATGTACT

Fln Alignment:

Contig17204___MECVFGLVGDGFALIAGDTSAVQSIVVQKTSEDKIMILDSHKLLGASGESGDRVQFTEYIQKNVHLYQFRNGIPLSTAATANFTRGKLATALRKNPYSVNLLLAGFDKDVGPSLYYIDYIATLHKVDKVAFGYGAYFSLSMMDRYYHKGMSVEEAIEFADKCILEIRSRLIVAPPNFVIKIVDKDGAREYAWRKTIEDASEPPATELLPAVEVQS
A9NKA9_______________MECVFGLVGDGFTLIAGDTSAVQSIVVQKTSEDKIMILDSHKLLGASGESGDRVQFTEYIQKNVHLYQFRNGIPLSTAATANFTRGELATALRKNPYSVNLLLAGFDKDVGPSLYYIDYIATLHKVDKVAFGYGAYFALSMMDRYYHKGMSVEEAIEFADKCILEIRSRLIVAPPNFVIKIVDKDGAREYGWRKTIEDASEPPAAELLPAVEVQS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
972		88		11	0.923564
1042	16		83		0.994512
1043	16			83	0.994512
1054		20		80	0.995493
1055	20			80	0.995493
1058		83		16	0.994512
1080			66	16	0.988813
1117		75		25	0.996473
1189			5	94	0.998744

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain