SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17161

Length: 858 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17161

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pollen allergen CJP38 n=1 Tax=Cryptomeria japonica RepID=Q588B8_CRYJA	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Beta-1,3-glucanase	-	-	2.8026e-45	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	AT3G13560; AT4g16260; AT4g26830; At2g01630; At3g13560; At3g57260; At4g16260; At4g26830; At5g42720; BG2; BG2-2; BG2-3; BGL32; BGLUC; BHVG1; F10M23.170; F28O9.110; GLUB1; GLUB2; GN1; GN2; GNS1; GSVIVT00002713001; GSVIVT00015734001; GSVIVT00025336001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	proteinaceous extracellular matrix	GO:0005578	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	licheninase activity	GO:0042972	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01630.1	O-Glycosyl hydrolases family 17 protein chr2:279541-281955 REVERSE LENGTH=501	6.00036e-42	45%
RefSeq	Arabidopsis thaliana	NP_001077866.1	glucan endo-1,3-beta-glucosidase 3 [Arabidopsis thaliana]	1.99965e-42	45%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
763	25		75		0.996473
766	75			25	0.996473
767		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain