SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17154

Length: 1509 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17154

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tonoplast intrinsic protein n=6 Tax=rosids RepID=C9WSP9_HEVBR	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aquaporin	IPR012269	-	0.0	-
Sma3	Major intrinsic protein	IPR000425	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G36830.1	" GAMMA-TIP, TIP1;1, GAMMA-TIP1 gamma tonoplast intrinsic protein chr2:15445490-15446336 FORWARD LENGTH=251"	78%
RefSeq	Arabidopsis thaliana	NP_181221.1	aquaporin TIP1-1 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002326382.1	aquaporin, MIP family, TIP subfamily [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ54

Fln msg:

Fln protein: MPFRSIAIGRPEEATHPAALKAALAEFISTLIFVFAGEGSGMAFAKLTSDASTTPAGLVAVALAHGLGLFVAVAVGANISGGHVNPAVTFGALVGGHITLLRGILYWIAQLLGSTVACLLLKYTTGGLTTSAFSLSSGVGVGNAVVFEIVMTFGLVYTVYATAVDPKKGTLGTIAPICIGFIVGANILAGGAFDGASMNPARAFGPALVSWTWEHHWIYWVGPLVGGGLAGVIYELFMISEPTHERLSSEDY*

Protein Length: 254

Fln nts: ATGGGGGAGCCAGTGACGGCCCGTGAGGCTTTTGTCTCCGCCCTTTCTAATTTTTATATTATTTTCATCATGTGGTCGGCAGGAAGGCTCTGGATCGAAGACTCTGGATGAGGGAAAACTGAAGTGTGATGAGGGAGGCATGGACCCGCCGGATTCCTTACGGAGACATAATGATATATGGACGGTGCCGACCACACAGAGTGGCACTGACAACTGAACTGACCGGTCACCATCTGAGCGCGGGAGTTCTGCAACCGGAGGCACTCAGGCGGTAATATAAATAAATTGGTCATGAATTTCACGGAAAGAGGAAAGCAAGCGTCGTCCAGAGGTGGAGTGTTCGATTCCCTTTGGCTAAAGAATCGTGCACATATTTGTTGGTAACA_-_ATGCCGTTCCGAAGCATTGCGATTGGGAGGCCAGAGGAAGCCACCCACCCGGCTGCTCTCAAGGCCGCCCTGGCGGAATTTATTTCGACGCTCATCTTCGTTTTCGCCGGGGAAGGATCCGGCATGGCTTTCGCCAAGCTTACGAGCGACGCTTCGACGACACCGGCCGGATTGGTAGCCGTAGCTCTGGCACATGGTCTAGGGCTCTTTGTGGCAGTGGCCGTGGGGGCCAACATATCTGGTGGTCACGTTAACCCTGCGGTCACTTTCGGTGCGCTCGTCGGAGGTCACATCACACTACTAAGGGGCATTCTCTACTGGATCGCGCAGCTCCTTGGTTCCACCGTTGCTTGCTTGTTGCTCAAGTACACAACCGGCGGCCTGACAACGTCGGCGTTCTCGTTGTCTTCTGGCGTGGGAGTGGGCAACGCTGTGGTGTTCGAGATCGTGATGACGTTCGGACTGGTGTATACCGTATACGCAACGGCGGTTGACCCGAAGAAGGGCACCTTGGGCACCATTGCCCCGATCTGCATTGGTTTCATCGTGGGCGCCAACATATTGGCCGGCGGCGCCTTCGACGGCGCTTCGATGAACCCGGCCAGGGCATTCGGGCCGGCCCTGGTGAGCTGGACTTGGGAGCACCACTGGATCTATTGGGTCGGTCCTCTTGTGGGTGGAGGCCTCGCTGGCGTTATCTACGAGCTTTTTATGATCTCCGAGCCAACCCACGAACGGTTGTCCTCGGAGGACTACTGA___GTTGGATAGGAACAATCATGTAATAAAGTGGCTTCTGTGTGTCGTGGCAAATTGGTTTGTTAGCGTCGTGGCCTTTGGTTAGCCACGCCGATTCCATGAACAGTCGGCCCTCATCATGCAAGTCAGTTTGTGTGCCGTGTGTGTTGTTGACGGATTTGTCTATTGATTACAATTGATATGGATTTTAATGTGTTCATTTCCATATTGTCGTAAGTGGTGAGCTAAGTATCGGAAGTTCGGAACATTAGCGTCATATCAGTGACCAGAAACTTCAAGAAATTGAACAATAATTGTGCATAGTGGTTCCCTCACTACGGTATTTGCAAATAGCTTTAACAATAATTGCTCTGAGTGCGCATTTATT

Fln Alignment:

Contig17154___MPFRSIAIGRPEEATHPXXXXXXXXEFISTLIFVFAGEGSGMAFAKLTSDASTTPXXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGALVGGHITLLRGILYWIAQLLGSTVACXXXXXXXXXXXXSAFSLSSGVGVGNAVVFEIVMTFGLVYTVYATAVDPKKGTLGTIAPICIGFIVGANILAGGAFDGASMNPARAFGPALVSWTWEHHWIYWXXXXXXXXXXXXIYELFMIS-EPTHERLSSEDY
A9NZ54_______________MPFRGVAIGRPEEVTHPTALKAALAELISTLIFVFAGEGSGMAFAKLTSDASTTPAGLVAVALAHGLGLFVAVAVGANISGGHVNPAVTFGALVGGHITLLRGILYWIAQLIGATVACLLLKYTTGGLSTSAFSLSSGVGVGNALVFEIVMTFGLVYTVYATAIDPKKGTLGTIAPICIGFIVGANILAGGAFDGASMNPARAFGPALVSWTWENHWIYWVGPLLGGGLAGVIYELFMISNEPTHERLSSEDY

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
326		80		20	0.995493
827	11	88			0.923564
893		87	12		0.992554
1305		88	12		1.0
1342	5	5		87	0.907274
1343	5			94	0.9982
1344	5			94	0.9982
1441	26	66			1.0
1442	58	41			1.0
1454		16		83	0.994512
1481	80		20		0.995493
1484	80		20		0.995493
1485	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain