SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17140

Length: 1958 nt

UniGene Fasta

>sp_v3.0_unigene17140
GGGAAAAATAGCCACTTTTCCAGAGGAGTGGGGAGCCAATCTAACAGCCGTGCAGCGAAGCTGCAGATCAGCTCCTAGCAGGATGACTGAACTTATTGAAAAACACCTAACCCTACAATTCCTACTCTACGAATTGTAGGGTTAGGTGTTTTTCAATAAGTTCAGTCATCCTGCTAGGAGCTGATCTGCAGCTTCGCTGCACGGCTGTTAGATTGGCTCCCCACTCCTCTGGAGTGGCTATTTTTCCCCCAACGCTTTAGGAATTTCTTTCATAGTCTTTTTTTTCTTCTATATCTGATCTGCATAGGCTGTAACATTTTGTTTGCATTTGAAAATGGGTGTGGCCTGTGGAGATTCTGTTGCTCCCATGACTGCAATTGGGTTTGAAGGATTTGAAAAGCGACTAGAGGTCGAGTTCTTTGCACCTTCAATTTTCAATGATCCAGAAGGAAGGGGTTTGAGGGCACTCACTCGAGCTGATTTGGATGAAATGCTGGATGCAGCACAATGCACAATTGTTTCTGAGCTCTCTAATGAGCAGCTCGATTCGTATGTCCTGTCTGAATCGAGTCTGTTTGTTTATCCGTATAAGCTTGTTCTGAAGACTTGTGGGACTACCAAGCTTCTTCTTTCCATTCCTCTGATTCTGAAGAACGCAAGCAAGTTGTCTCTCTCTGTCAAAAATGTTAAATACACTCGAGGGACATTTATCTTTGCTGGAGTCCAGCCATTTCCTCATCGCAGCTTCGGCGAGGAAATATCTTACTTGGATAAATACTTTGGAAAGCTTGGTTCTGGAGGCAAGGCATATGTGATGGGGGATTCTGGGAAAGCGTATAATTGGCATGTCTACTCTGCTAGTGCTGTGGATACTTCATTTGAGGGAAATGCTCCTCCCGTTTATACATTAGAGATGTGCATGACACAACTGGACCGCAAACAGGCGTCTGTCTTTTACAAGGATACCTCCAAGTCTGCAATGGAGATTACACTTAATTCTGGAATAAGCGATATTCTTCCTGAGTCTAAGATTTGTGACTTTCAGTTTGATCCATGTGGGTATTCCATGAATGCTCTTGAAGGAGCAGCTATTTCCACTATTCATGTAACGCCTGAGGATGGTTTCAGTTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGCGACCTTGAAGCACTGGTGGAGAGGGTATTAAGCTGTTTCAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAGAATGGCCACTAACGAGTCTCCCAGGTCTACTCTGCCATTGCTTGCTTGGGAAGAGGAAAGTGAAGAAAATGGCTGTTTGCAATTGACCGAAAAGGAAAAGAAGCTTCTCAAATGTGAAATGCAGGAAGGTTGAGAGATGCACATTGTTCTGGTTTCATTGTCTTCTATCGTGTCAAGCTTCTATCATGTCAGTCAGAATCTACCGCTGTCAATCAAGACGACGGTTCTACTGCAAGTATTGAGTCTAGTATTTAGATTGGAATCAACAATAAAGTGGGTGTAGTGCAGTTTAATATCTTTTGCGTTGGGGGAGGGTTGTAGCTTAGGATGATATGTTTTTCAATAAATATATTTGGGCATAGAGTCCAATTTGTCATTGTGTTGGGGAGGGTTGTGGCGTAGGGTGATATATTTCCTTTTGTAACAGGATGTGTGTCTCACTTGAATGGATGATATGTTTTTCAATAAATATAGTTGGGCGTATAGTCCAATTTTTCATTCTGTGTTGGGGAGGGTTGTGGCGTAGGATGATATATTTCCTTTTGTAACAGGATGTGTTTGTCACTTGAATAAATATTTTCTGTTTCAATGTGGTC

Ace file of the UniGene sp_v3.0_unigene17140

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI	-	-	93%
FL-Next	sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	S-adenosylmethionine decarboxylase	IPR001985	-	-
Sma3	S-adenosylmethionine decarboxylase subgroup	IPR018167	-	-
Sma3	S-adenosylmethionine decarboxylase, core	IPR016067	-	-
Sma3	S-adenosylmethionine decarboxylase, conserved site	IPR018166	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02470.1	SAMDC S-adenosylmethionine decarboxylase chr3:510223-511323 FORWARD LENGTH=366	60%
RefSeq	Arabidopsis thaliana	NP_001154585.1	S-adenosylmethionine decarboxylase 1 beta chain [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002329311.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G8C847

Fln msg:

Fln protein: MGVACGDSVAPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEQLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKAYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSKSAMEITLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKHCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENGCLQLTEKEKKLLKCEMQEG*

Protein Length: 388

Fln nts: GGGAAAAATAGCCACTTTTCCAGAGGAGTGGGGAGCCAATCTAACAGCCGTGCAGCGAAGCTGCAGATCAGCTCCTAGCAGGATGACTGAACTTATTGAAAAACACCTAACCCTACAATTCCTACTCTACGAATTGTAGGGTTAGGTGTTTTTCAATAAGTTCAGTCATCCTGCTAGGAGCTGATCTGCAGCTTCGCTGCACGGCTGTTAGATTGGCTCCCCACTCCTCTGGAGTGGCTATTTTTCCCCCAACGCTTTAGGAATTTCTTTCATAGTCTTTTTTTTCTTCTATATCTGATCTGCATAGGCTGTAACATTTTGTTTGCATTTGAAA_-_ATGGGTGTGGCCTGTGGAGATTCTGTTGCTCCCATGACTGCAATTGGGTTTGAAGGATTTGAAAAGCGACTAGAGGTCGAGTTCTTTGCACCTTCAATTTTCAATGATCCAGAAGGAAGGGGTTTGAGGGCACTCACTCGAGCTGATTTGGATGAAATGCTGGATGCAGCACAATGCACAATTGTTTCTGAGCTCTCTAATGAGCAGCTCGATTCGTATGTCCTGTCTGAATCGAGTCTGTTTGTTTATCCGTATAAGCTTGTTCTGAAGACTTGTGGGACTACCAAGCTTCTTCTTTCCATTCCTCTGATTCTGAAGAACGCAAGCAAGTTGTCTCTCTCTGTCAAAAATGTTAAATACACTCGAGGGACATTTATCTTTGCTGGAGTCCAGCCATTTCCTCATCGCAGCTTCGGCGAGGAAATATCTTACTTGGATAAATACTTTGGAAAGCTTGGTTCTGGAGGCAAGGCATATGTGATGGGGGATTCTGGGAAAGCGTATAATTGGCATGTCTACTCTGCTAGTGCTGTGGATACTTCATTTGAGGGAAATGCTCCTCCCGTTTATACATTAGAGATGTGCATGACACAACTGGACCGCAAACAGGCGTCTGTCTTTTACAAGGATACCTCCAAGTCTGCAATGGAGATTACACTTAATTCTGGAATAAGCGATATTCTTCCTGAGTCTAAGATTTGTGACTTTCAGTTTGATCCATGTGGGTATTCCATGAATGCTCTTGAAGGAGCAGCTATTTCCACTATTCATGTAACGCCTGAGGATGGTTTCAGTTATGCAAGTTTTGAGGCAATGGGCTACAATCCCAAGCATTGCGACCTTGAAGCACTGGTGGAGAGGGTATTAAGCTGTTTCAGGCCTATGGTATTCTCCATCTCAGTTCATGCCAGTGTGGGCAACGGGCATTCTTCATGGACCAGGCCAGTTTGGCCACAGGGATATATCTGTGACATGACAAGTGATCAAGGGCTCACAGGAAAGAGCAGTGTTGTATATCATACATACAGAATGGCCACTAACGAGTCTCCCAGGTCTACTCTGCCATTGCTTGCTTGGGAAGAGGAAAGTGAAGAAAATGGCTGTTTGCAATTGACCGAAAAGGAAAAGAAGCTTCTCAAATGTGAAATGCAGGAAGGTTGA___GAGATGCACATTGTTCTGGTTTCATTGTCTTCTATCGTGTCAAGCTTCTATCATGTCAGTCAGAATCTACCGCTGTCAATCAAGACGACGGTTCTACTGCAAGTATTGAGTCTAGTATTTAGATTGGAATCAACAATAAAGTGGGTGTAGTGCAGTTTAATATCTTTTGCGTTGGGGGAGGGTTGTAGCTTAGGATGATATGTTTTTCAATAAATATATTTGGGCATAGAGTCCAATTTGTCATTGTGTTGGGGAGGGTTGTGGCGTAGGGTGATATATTTCCTTTTGTAACAGGATGTGTGTCTCACTTGAATGGATGATATGTTTTTCAATAAATATAGTTGGGCGTATAGTCCAATTTTTCATTCTGTGTTGGGGAGGGTTGTGGCGTAGGATGATATATTTCCTTTTGTAACAGGATGTGTTTGTCACTTGAATAAATATTTTCTGTTTCAATGTGGTC

Fln Alignment:

Contig17140___MGVACGDSVAPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEQLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKAYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSKSAMEITLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGFSYASFEAMGYNPKHCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENG
G8C847_______________MGVACGDSVVPMTAIGFEGFEKRLEVEFFAPSIFNDPEGRGLRALTRADLDEMLDAAQCTIVSELSNEHLDSYVLSESSLFVYPYKLVLKTCGTTKLLLSIPLILKNASKLSLSVKNVKYTRGTFIFAGVQPFPHRSFGEEISYLDKYFGKLGSGGKAYVMGDSGKGYNWHVYSASAVDTSFEGNAPPVYTLEMCMTQLDRKQASVFYKDTSNSAMEITLNSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGSSYASFEAMGYNPKDCDLEALVERVLSCFRPMVFSISVHASVGNGHSSWTRPVWPQGYICDMTSDQGLTGKSSVVYHTYRMATNESPRSTLPLLAWEEESEENG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
933	4		95		0.995055
1657		7		92	1.0
1886			85	14	1.0
1953		10		90	0.90298
1954	10		90		0.90298
1959	40	20		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain