SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17131

Length: 968 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17131

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_6.assembly12x (Fragment) n=9 Tax=Vitis vinifera RepID=D7TSY9_VITVI	-	-	8.0e-27	35%
FL-Next	tr=Germin-like protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	33%

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
232	42		57		1.0
349	11	88			0.923564
350		88		11	0.923564
358	11	88			0.923564
361	55		33		1.0
362	11	88			0.923564
365		87		12	0.992554
397			10	90	0.90298
398			90	10	0.90298
401		10	90		0.90298
402		10	90		0.90298
403	90			10	0.90298
404		90		10	0.90298
405		90	10		0.90298
406		90	10		0.90298
409			10	90	0.90298
413		10	90		0.90298
415		10		90	0.90298
416	10		90		0.90298
579		16	83		0.994512
683			75	25	0.996473
688		75	25		0.996473
733		63		36	1.0
777		44	44		1.0
801		88		11	0.923564
825	37		62		1.0
828	87		12		0.992554
841		5		92	0.999984
844		46		53	1.0
862	31			68	1.0
872		34		65	1.0
874		4		95	0.997218
882	53		46		1.0
913		88		12	1.0
924		15		85	1.0
928	20	80			0.999996
930	90	10			0.90298
933		10	90		0.90298

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain