SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17114

Length: 1506 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17114 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative chitinase [Musa acuminata]	-	-	65%
FL-Next	tr=Class I chitinase; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12500.1	ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB basic chitinase chr3:3962501-3963984 REVERSE LENGTH=335	68%
RefSeq	Arabidopsis thaliana	NP_566426.2	chitinase [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002306220.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G9B4E8

Fln msg:

Fln protein: MKSMKFSAMAMAIALLTMATMNLYFVSAEQCGRQAGGALCPGGLCCSKWGWCGNTDAHCGQDCQSQCGGSTPTPPSPTPGGQGVASIITESIFNELLKHRNDAGCKASGFYTYSAFIAAANAFPSFGTTGDVATRKRELAAFFGQTSHETTGGWATAPDGPYAWGYCFKEEQGNPPAEYCKPTSQWPCASGKRYYGRGPVQLSWNYNYGPAGKAIGFDGINNPDIVASDATVSFKTAVWFWMTAQSPKPSCHDVMTGKWIPSGSDSAAGRAAGYGAVTNIINGGLECGKGSDSRQQDRIGFYKRYSDILGVSYGSNLDCNNQRPFGAAVQSEPRLIKTVV*

Protein Length: 342

Fln nts: TATTTCATATAGCTTCAAGAGACGTGAACGTGAAGGAGACCGGAAATATGGCTATAAACGTCGTTCTGTTGTCTCGTCACTTTAACCGAAAGTTGCAATTAATGCAGTGCTGAGATAGAAACGAGTGTCTGCAAT_-_ATGAAATCGATGAAGTTCTCCGCTATGGCGATGGCGATCGCCTTGCTTACAATGGCGACGATGAATTTGTATTTTGTATCTGCGGAGCAATGCGGACGGCAAGCAGGCGGAGCTCTTTGTCCCGGTGGCTTGTGCTGCAGCAAATGGGGATGGTGTGGCAACACGGACGCCCATTGCGGGCAGGATTGCCAGAGCCAATGCGGAGGATCCACTCCCACGCCTCCCTCACCCACTCCCGGTGGACAGGGAGTTGCATCTATCATCACTGAAAGCATTTTCAATGAGTTATTGAAGCACAGAAACGACGCCGGTTGCAAGGCCAGCGGATTCTACACCTACTCTGCCTTCATTGCGGCTGCCAATGCTTTTCCCTCCTTCGGCACCACCGGCGATGTGGCTACTCGGAAAAGAGAGCTCGCTGCTTTCTTTGGCCAAACCTCCCACGAAACCACAGGCGGATGGGCGACGGCCCCAGACGGCCCGTACGCGTGGGGTTATTGTTTCAAAGAGGAGCAAGGCAATCCTCCCGCCGAGTACTGCAAGCCAACCTCCCAGTGGCCCTGTGCATCTGGAAAGAGATACTACGGACGAGGGCCCGTTCAATTGTCATGGAACTACAACTATGGACCGGCCGGCAAAGCAATCGGATTCGACGGCATAAACAACCCGGACATTGTTGCTAGCGATGCCACGGTCTCTTTTAAGACGGCGGTGTGGTTCTGGATGACCGCCCAGTCTCCAAAACCTTCCTGCCACGACGTCATGACTGGGAAATGGATTCCGTCCGGCAGCGACAGCGCCGCTGGGAGAGCGGCCGGATATGGAGCAGTTACCAACATCATCAACGGCGGGCTGGAGTGCGGGAAAGGCAGTGACTCGAGGCAGCAGGATCGCATCGGCTTCTACAAAAGATACAGTGACATTCTTGGGGTGAGCTACGGATCAAACCTGGATTGCAACAACCAGAGGCCTTTCGGCGCTGCGGTTCAATCTGAACCTCGTCTTATCAAAACCGTGGTTTGA___ACGCTTTTCATAAATCTGAGATTTGGGATTAGCATCCGTTCGATCTCAATCTGTGTACCTGTTTGCCATAATAAAATATAATAAAACCCTTACCAAATAACTGTGGCATTGGATGGACGTGCCGTGCTTTTCAAAAGGTTGAGAATAATGGGGATTTGGTGAATCACAAGACATCTTCATTCATGTTTCCCGTATGCGAATATGCTTTCGAATATTATATTATAAATTAAATAATATTGAGCATTCCTTTACTTGAGCCGGTGTGATTATCACAGACGGCAAAACGCTATACACCAAACTAACTAAAGCGAAATGTCCACGTCCGCCATGGTAGCGGCTCGCTTCTTA

Fln Alignment:

Contig17114___NLYFVSAEQCGRQXXXXXXXXXXXCSKWGWCGNTDAHCGQDCQXXXXXXXXXXXXXXXXXXGVASIITESIFNELLKHRNDAGCKASGFYTYSAFIAAANAFPSFGTTGDVATRKRELAAFFGQTSHETTGGWATAPDGPYAWGYCFKEEQGNPPAEYCKPTSQWPCASGKRYYGRGPVQLSWNYNYGPAGKAIGFDGINNPDIVASDATVSFKTAVWFWMTAQSPKPSCHDVMTGKWIPXXXXXXXXXXXXXXAVTNIINGGLECGKGSDSRQQDRIGFYKRYSDILGVSYGSNLDCNNQRPFGAAVQSEPRLIKTVV
G9B4E8_______________NLYFVSAEQCGQQAGGALCPGGLCCSKWGWCGNTDAHCGQDCQSQCGGSTPTPPSPTPGGQGVASIITESIFNELLKHRNDAGCKASGFYTYSAFIAAANAFPSFGTTGDVATRKRELAAFFGQTSHETTGGWATAPDGAYAWGYCFKEEQGNPPAEYCQATSQWPCASGKRYYGRGPVQLSWNYNYGPAGKAIGFDGINNPDIVASDATVSFKTAIWFWMTAQSPKPSCHDVMTGKWTPSGSDSAAGRAAGYGAVTNIINGGLECGKGSDSRQQDRIGFYKRYSDILGVSYGSNLDCNNQRPFGAAVQSEARLIKTVV

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
605	11		88		0.923564
773	83		16		0.994512
774		83		16	0.994512
776	20		80		0.995493
780	25	75			0.996473
781	25			75	0.996473
782		75	25		0.996473
788	25			75	0.996473
789	75	25			0.996473
802	66			33	0.997452
805		33		66	0.997452
1027		20	80		0.995493
1072		16		83	0.994512
1074		16		83	0.994512
1075	16		83		0.994512
1206	14	85			0.993533
1207		85		14	0.993533
1209	14			85	0.993533
1212	14			85	0.993533
1214	14	85			0.993533
1216	85			14	0.993533
1314	6			93	0.999264
1335		11		88	1.0
1344		52		16	1.0
1397	66	33			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain