SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17104

Length: 1507 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17104 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S7Q2_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04290.1	ATLTL1, LTL1 Li-tolerant lipase 1 chr3:1133620-1136223 REVERSE LENGTH=366	57%
RefSeq	Arabidopsis thaliana	NP_187079.1	GDSL esterase/lipase LTL1 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002325360.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQA5

Fln msg:

Fln protein: MEFSLVALILLASAARIADAAPALFVFGDSLVDSGNNNYIATAARADRYPYGIDYPTHRPTGRFSNGLNIPDYISQKLGIEAVTPYLNPALTGRELLRGANFASAGVGILNDTGIQFANIIRMPRQFEYFGQYKDRVAAIIGRPATERLVAEGLVTIALGGNDYVNNYYLVPVSLRSLQYNLPAYSSYIISEYKKYLARFYEMGARRVLVLSTGPLGCSPAMRAMRSLNGDCAPQLQRATVLFNTGLKSIVDQLNNQFNAQIYTMGNSFPPSEDVFTNPAANGFSNAKNACCGQGPYNGLGLCTPSSNVCSDRYGYVFWDQYHPTQHAISVIVDRLFSGTTSDIYPVNLRDMMNLDAESKSSMTNQTLRKN*

Protein Length: 373

Fln nts: ATGGGGGAACCGATTCAGGTTGGGCAGCTCGAACGAGTTAATGCAGCTCTGCTCGGCGAATTTTTAAAGAGCCCTGTTGTCTAGCTTTTGCTATAAAGCACGCAGTGCGTCGTGTTTTATTGCTGACACTCATCTACACGAAAATTGGAGTTACAGTTTTGGTTAGGAAACA_-_ATGGAATTTTCTCTTGTGGCTCTGATACTGTTGGCCTCTGCTGCAAGGATTGCAGACGCAGCGCCGGCTTTGTTTGTGTTCGGAGACTCGCTGGTGGACAGTGGCAACAACAATTACATTGCTACGGCTGCAAGAGCTGACAGATACCCTTACGGGATTGATTATCCCACCCATCGACCCACTGGACGCTTCTCCAATGGATTAAATATTCCCGATTACATCAGCCAGAAGCTAGGGATTGAAGCCGTGACTCCATACCTTAATCCTGCCCTCACCGGTAGGGAATTACTGAGAGGTGCCAACTTCGCCTCTGCAGGCGTTGGCATTCTTAACGATACGGGAATCCAATTTGCGAATATAATCAGGATGCCCCGGCAGTTCGAGTACTTTGGACAGTATAAAGATAGAGTTGCAGCCATCATAGGACGTCCTGCGACCGAAAGGCTCGTTGCCGAGGGGCTAGTCACAATCGCCCTGGGAGGAAATGATTATGTCAATAATTACTACCTTGTTCCTGTATCACTGAGATCCCTGCAGTACAATTTGCCCGCCTACTCTAGCTACATTATCTCAGAATATAAGAAGTATCTAGCGAGATTTTACGAGATGGGAGCACGCAGGGTTCTGGTGCTGTCCACGGGTCCTTTGGGTTGTTCTCCCGCAATGAGGGCAATGAGGTCCTTAAATGGTGACTGTGCTCCGCAGCTACAGCGAGCCACTGTGCTTTTCAATACGGGACTGAAATCCATAGTGGATCAACTCAACAACCAGTTTAATGCTCAGATCTATACAATGGGTAACTCTTTTCCGCCTAGCGAGGATGTGTTCACCAACCCTGCGGCGAACGGATTCTCGAATGCCAAGAACGCTTGCTGCGGACAAGGACCCTATAACGGTTTAGGGCTTTGCACTCCGTCGTCAAACGTGTGCTCAGACAGGTATGGCTATGTGTTCTGGGACCAGTATCATCCCACTCAACACGCTATTAGCGTCATTGTCGACCGCTTGTTTTCCGGTACCACGTCTGATATCTATCCTGTCAATTTAAGAGATATGATGAATCTTGACGCTGAGAGCAAGTCGTCCATGACCAACCAAACCCTAAGGAAGAATTAA___CAGGTTGAAGATTCATTGATCGCAACTACTTTCAAAATAAATAATGTAATAGACTGCCGTGGTATTTCTTGATTATCTATGTTGTTTGCTTTGAAAGCTTCACTAAATATTCAATGCAATTGTATTAGATTTCTCTAATTTCTCTTCTTCTTTTTTCCATACTAGTAGTTGAACGGCGTGATACTGAACACTCCGTTTATGGATTTACGTAAAAACATT

Fln Alignment:

Contig17104___FVFGDSLVDSGNNNYIATAARADRYPYGIDYPTHRPTGRFSNGLNIPDYISQKLGIEAVTPYLNPALTGRELLRGANFASAGVGILNDTGIQFANIIRMPRQFEYFGQYKDRVAAIIGRPATERLVAEGLVTIALGGNDYVNNYYLVPVSLRSLQYNLPAXXXXXXXXXXXYLARFYEMGARRVLVLSTGPLGCSPAMRAMRSLNGDCAPQLQRATVLFNTGLKSIVDQLNNQFNAQIYTMGNSFPPSEDVFTNPAANGFSNAKNACCGQGPYNGLGLCTPSSNVCSDRYGYVFWDQYHPTQHAISVIVDRLFSGTTSDIYPVNLRDMMNLD
A9NQA5_______________FVFGDSLVDSGNNNYISTTARANSYPYGIDYPTHRPTGRFSNGYNIPDYISMKLGAESALPYLDPALRGNALLRGANFASAGVGILNDTGIQFANIIRMPQQFQYFQQYKNKVSSIIGKNATDKLVAGALVTIALGGNDYVNNYYLVPVSLRSLQYSLTSYSSFIISEYKKYLAKFYELGARRVLVLSTGPLGCSPAMRAMRSINGECAPQLMQATALFNSGLKNIVDQLNNQYSAQIYTMGNSFPPNQDVFNNPQANGFSNANNACCGQGLYNGIGLCTAASNLCADRDSYVFWDQYHPSQRAIKIIVDRLFSGSMADIYPVNLNDMLKLD

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
234	66	33			0.997452
700		3		96	0.988939
1184	2		89		0.999999
1384	13	80	6		0.999961
1385	13	80	6		0.999961
1388	13	53			1.0
1392	75		25		0.996473
1393	25		25	50	0.995533
1394	25		50	25	0.995533
1395		33	66		0.997452
1397		33	66		0.997452
1400		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain