SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17094

Length: 2167 nt

UniGene Fasta

>sp_v3.0_unigene17094
ATGGGGGTATAAGGCGGAGAAAGCCTCAAGGTAATGGGGACATTACCCTTATTCTGAATCTGTGAGGCTTCTCTGTCAGGTTCAGTTCGTATCTTAGGGTTCTTTTTTCTTTCGATTTCCTGTGTCGCAAGGTTTTAGATCGCCAAGATGCGTGAAATCCTGCACATTCAGGGCGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTCTGTGATGAGCACGGAATCGATCCCACTGGGAGATACCAGGGCACTTCAGATCTACAGCTCGAAAGGGTTAATGTTTACTACAATGAGGCGAGCTGTGGGCGATTTGTTCCCCGTGCTGTGCTTATGGATCTGGAGCCTGGGACCATGGACAGTGTGAGGACCGGGCCTTATGGCCAGGTCTTTAGGCCTGATAACTTCGTTTTTGGCCAGTCCGGGGCTGGGAACAACTGGGCCAAGGGCCATTACACTGAGGGGGCCGAGCTCATTGATTCCGTTCTTGATGTCGTCAGGAAGGAGGCCGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTGTGTCACTCTTTGGGGGGAGGCACTGGATCTGGAATGGGAACCCTCTTGATCTCCAAGATCCGAGAGGAATACCCTGATAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCCAAGGTGTCTGATACCGTGGTGGAGCCTTACAATGCTACACTTTCTGTGCATCAGCTGGTGGAGAATGCCGACGAGTGTATGGTGCTGGACAATGAGGCCCTCTACGACATCTGCTTCAGGACTCTCAAGCTCACGACACCTAGCTTTGGTGATTTGAACCATTTGATATCTGCAACAATGAGTGGAGTCACCTGCTGCCTGAGGTTTCCTGGCCAGTTGAACTCAGATCTGAGGAAGCTGGCAGTGAATCTGATCCCTTTCCCCCGTCTTCACTTTTTTATGGTGGGATTTGCCCCTTTGACCTCTCGTGGTTCACAGCAATACAGAGCCCTTACAGTTCCGGAGCTCACACAACAGATGTGGGATTCCAAGAACATGATGTGCGCTGCAGATCCACGCCATGGCAGGTATCTGACGGCATCTGCTATGTTCAGGGGCAAGATGAGTACCAAAGAGGTGGATGAGCAAATGATGAATGTTCAGAACAAGAATTCCTCCTACTTTGTGGAATGGATCCCTAATAATGTGAAATCCAGTGCATGTGATATTCCACCAAAAGGCCTGTCTATGTCGTCAACATTCATTGGTAACTCGACATCCATTCAGGAGATGTTCAGGAGAGTAAGTGAGCAGTTCACTGCTATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAGGGCATGGATGAGATGGAGTTCACTGAAGCAGAGAGTAACATGAATGATTTGGTTTCTGAGTACATGCAGTACCAGGATGCCAGTGCAGAGGATGATGAATACTATGATGATGAAGAATCAGCTCAGGAGAGCTAGATATCGTTAGTTATTAGCTCACCATCAACAACAGCTAGTTGTTTCAACGCCTAGTAGTTGTTTGTGTGGATTTCATTTACATTTCTTGTTCTTTCATAGTCTGCTCTGCTCTCCTGGAGGTTCAAGAATTGAATTCATAAGCTTTGTATACAACTCCATATGCTTTTGCTTTTGTTCAGTAGATGAATCATGACAATATTTTGAATTTGTTTGTCTGATATATAGCTACATGACATGTGTTTTAGCCTATGTTTATCAGATGCAGCACTGGCAAGCTTTTAATTTTGTTGGTCAGATATAATATTGGAAGACCATATTTTTCATTTTTACTACCTTGTGGCAACTATGATTTTTACTACCTTGTGATCCATATGCTGATTATGGTTGTATGTGAGGTTCCTAGTGTCCGGTGTTCTAATTGTTAAAATAAGATTGTCTATCTTATGTTGTAGAGTTGGCATGGATTTGTATCATCTGGTAGTTATTGGGGACATTTAGAGAGATTATAATGTTAAATGTTGCTGGATTCTGTATATCTGGCACTGTTAAATGTTAATGAATTCTGTATGCCTGTATATGGACTGCTTTGTCTCCTTGGATTGTGAAAGTACTTCATGTTCTTTAGTGCACTTACCTCAGCTTTAATGGAATTTAGCGTAGTAATGGATTATACAACTATTAG

Ace file of the UniGene sp_v3.0_unigene17094

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ	-	-	0.0	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Tubulin beta chain	-	-	5.726e-12	-

Source	Gene names
Sma3	At1g20010; At1g75780/T4O12_29; At2g29550; At5g12250; At5g12250/MXC9_21; At5g23860; BTub-1; BTub1; F16P2.7; GSVIVT00000394001; GSVIVT00000417001; GSVIVT00009147001; GSVIVT00014415001; GSVIVT00017326001; GSVIVT00017820001; GSVIVT00021443001; GSVIVT000232810

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Beta tubulin	IPR002453	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12250.1	TUB6 beta-6 tubulin chr5:3961317-3962971 REVERSE LENGTH=449	96%
RefSeq	Arabidopsis thaliana	NP_196786.1	tubulin beta-6 chain [Arabidopsis thaliana]	96%
RefSeq	Populus trichocarpa	XP_002322609.1	tubulin, beta chain [Populus trichocarpa]	97%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABQ9

Fln msg:

Fln protein: MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQYQDASAEDDEYYDDEESAQES*

Protein Length: 447

Fln nts: ATGGGGGTATAAGGCGGAGAAAGCCTCAAGGTAATGGGGACATTACCCTTATTCTGAATCTGTGAGGCTTCTCTGTCAGGTTCAGTTCGTATCTTAGGGTTCTTTTTTCTTTCGATTTCCTGTGTCGCAAGGTTTTAGATCGCCAAG_-_ATGCGTGAAATCCTGCACATTCAGGGCGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAAGTTGTCTGTGATGAGCACGGAATCGATCCCACTGGGAGATACCAGGGCACTTCAGATCTACAGCTCGAAAGGGTTAATGTTTACTACAATGAGGCGAGCTGTGGGCGATTTGTTCCCCGTGCTGTGCTTATGGATCTGGAGCCTGGGACCATGGACAGTGTGAGGACCGGGCCTTATGGCCAGGTCTTTAGGCCTGATAACTTCGTTTTTGGCCAGTCCGGGGCTGGGAACAACTGGGCCAAGGGCCATTACACTGAGGGGGCCGAGCTCATTGATTCCGTTCTTGATGTCGTCAGGAAGGAGGCCGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTGTGTCACTCTTTGGGGGGAGGCACTGGATCTGGAATGGGAACCCTCTTGATCTCCAAGATCCGAGAGGAATACCCTGATAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCCAAGGTGTCTGATACCGTGGTGGAGCCTTACAATGCTACACTTTCTGTGCATCAGCTGGTGGAGAATGCCGACGAGTGTATGGTGCTGGACAATGAGGCCCTCTACGACATCTGCTTCAGGACTCTCAAGCTCACGACACCTAGCTTTGGTGATTTGAACCATTTGATATCTGCAACAATGAGTGGAGTCACCTGCTGCCTGAGGTTTCCTGGCCAGTTGAACTCAGATCTGAGGAAGCTGGCAGTGAATCTGATCCCTTTCCCCCGTCTTCACTTTTTTATGGTGGGATTTGCCCCTTTGACCTCTCGTGGTTCACAGCAATACAGAGCCCTTACAGTTCCGGAGCTCACACAACAGATGTGGGATTCCAAGAACATGATGTGCGCTGCAGATCCACGCCATGGCAGGTATCTGACGGCATCTGCTATGTTCAGGGGCAAGATGAGTACCAAAGAGGTGGATGAGCAAATGATGAATGTTCAGAACAAGAATTCCTCCTACTTTGTGGAATGGATCCCTAATAATGTGAAATCCAGTGCATGTGATATTCCACCAAAAGGCCTGTCTATGTCGTCAACATTCATTGGTAACTCGACATCCATTCAGGAGATGTTCAGGAGAGTAAGTGAGCAGTTCACTGCTATGTTTAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAGGGCATGGATGAGATGGAGTTCACTGAAGCAGAGAGTAACATGAATGATTTGGTTTCTGAGTACATGCAGTACCAGGATGCCAGTGCAGAGGATGATGAATACTATGATGATGAAGAATCAGCTCAGGAGAGCTAG___ATATCGTTAGTTATTAGCTCACCATCAACAACAGCTAGTTGTTTCAACGCCTAGTAGTTGTTTGTGTGGATTTCATTTACATTTCTTGTTCTTTCATAGTCTGCTCTGCTCTCCTGGAGGTTCAAGAATTGAATTCATAAGCTTTGTATACAACTCCATATGCTTTTGCTTTTGTTCAGTAGATGAATCATGACAATATTTTGAATTTGTTTGTCTGATATATAGCTACATGACATGTGTTTTAGCCTATGTTTATCAGATGCAGCACTGGCAAGCTTTTAATTTTGTTGGTCAGATATAATATTGGAAGACCATATTTTTCATTTTTACTACCTTGTGGCAACTATGATTTTTACTACCTTGTGATCCATATGCTGATTATGGTTGTATGTGAGGTTCCTAGTGTCCGGTGTTCTAATTGTTAAAATAAGATTGTCTATCTTATGTTGTAGAGTTGGCATGGATTTGTATCATCTGGTAGTTATTGGGGACATTTAGAGAGATTATAATGTTAAATGTTGCTGGATTCTGTATATCTGGCACTGTTAAATGTTAATGAATTCTGTATGCCTGTATATGGACTGCTTTGTCTCCTTGGATTGTGAAAGTACTTCATGTTCTTTAGTGCACTTACCTCAGCTTTAATGGAATTTAGCGTAGTAATGGATTATACAACTATTAG

Fln Alignment:

Contig17094___MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQ
D5ABQ9_______________MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYQGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSACDIPPKGLSMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYMQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1803		1		93	1.0
1808		96		3	0.982166
1937	75			25	0.996473
2004	14		85		0.993533
2006			16	83	0.994512
2008		83	16		0.994512
2056		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain