SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17078

Length: 1836 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17078

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI	-	-	79%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Sma3	Pectinesterase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose and glucuronate interconversions	00040	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	ARATH1; ARATH12; ARATH13; ARATH16; ARATH17; ARATH20; ARATH22; ARATH24; ARATH25; ARATH26; ARATH27; ARATH32; ARATH33; ARATH34; ARATH35; ARATH36; ARATH39; ARATH4; ARATH40; ARATH41; ARATH44; ARATH45; ARATH46; ARATH47; ARATH59; ARATH6; ARATH60; ARATH61; ARATH8

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	-
Sma3	translation release factor activity, codon specific	GO:0016149	Molecular Function	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	translational termination	GO:0006415	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Peptide chain release factor class I/class II	IPR000352	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Peptide chain release factor 1	IPR004373	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Peptide chain release factor	IPR005139	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Carbohydrate-binding/sugar hydrolysis domain	IPR006633	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G53830.1	ATPME2, PME2 pectin methylesterase 2 chr1:20098562-20100745 FORWARD LENGTH=587	50%
RefSeq	Arabidopsis thaliana	NP_175786.1	pectinesterase 2 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002317208.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVV0

Fln msg:

Fln protein: MPFIAVEGETRRRNRVTAMASLVLVAIIICAAVLILPFKNQAEGVAAVELQNPIDTIAYVCNSTLYPDLCYSSLSPHLGLSPAQPKKLLHVALTVAMEEANKAFALVSRFVKQSMALQDCVQLMDITRDQLDSSISLLKRHDLKAFTREQSDDLQTWLSASITNQDTCLDGISDYPKSVARVLVDSNVQNLRKLVSNSLAIANAAQESRRPDSSPELRLPSDSIKDDFPSWLSAEDRRLLRSFPNDVVADVIVAQDGSGKFKTITEAIAAAPEKSSKRYVIKVKKGTYKENVEVGKNKTNIMLIGEGMEATIVTGSRNVVDGSTTFNSSTLAAVGKGFMAQDMAFVNTAGPDKHQAVALRVGSDQSVLYRCKIAAYQDTLYAHSLRQFYRECNILGTVDFIFGNAAVVFQSCTMIPRKPGANQKNAITAQGRTDPNQNTGTSIHNCKITPDADLVPVKSSFPTYLGRPWKEYSRTVYMQSYLDDVIQPAGWLEWNGSFALQTLYYGEYMNTGPGAATANRVKWAGYRVITSSQEASKFTVGEFIQGDSWLQSTGVDYVDGLTE*

Protein Length: 565

Fln nts: ATGGGGCCCAATCTCTGCGTCTGA_-_ATGCCGTTCATAGCAGTGGAAGGAGAAACAAGAAGAAGAAATAGAGTCACTGCAATGGCTTCCCTGGTGCTTGTGGCGATCATTATTTGTGCCGCTGTGTTGATCCTCCCTTTCAAGAATCAAGCTGAAGGTGTAGCAGCTGTAGAGCTGCAGAACCCAATCGATACGATCGCATACGTTTGTAACAGCACTCTCTATCCAGACCTCTGTTATTCCAGTCTCTCGCCTCATCTAGGATTGTCCCCTGCACAACCCAAGAAGCTCCTTCACGTTGCTCTAACGGTGGCCATGGAGGAAGCGAACAAGGCTTTCGCCCTTGTTTCTAGATTCGTCAAGCAAAGCATGGCTCTTCAAGACTGCGTACAGCTCATGGATATTACGAGGGACCAACTTGACAGCTCTATCTCTCTTTTAAAGCGCCACGATCTAAAAGCATTCACTCGTGAGCAGTCCGACGATTTACAGACATGGCTCAGCGCCTCTATCACTAACCAGGACACCTGCTTAGACGGAATTTCAGATTACCCAAAAAGCGTGGCCAGAGTTCTTGTTGACAGCAACGTGCAAAACTTGAGGAAGCTCGTCAGTAATTCTCTGGCAATAGCAAACGCGGCGCAGGAGTCAAGAAGGCCCGATTCGTCCCCCGAGCTACGCCTCCCGTCCGATTCCATCAAGGATGATTTTCCTTCATGGCTATCTGCAGAAGATCGGAGGCTCCTACGTTCCTTTCCAAACGACGTCGTTGCTGACGTGATCGTGGCTCAGGATGGCTCTGGAAAATTCAAAACGATAACAGAAGCCATAGCTGCGGCCCCGGAGAAAAGCTCTAAGAGATACGTGATCAAGGTGAAGAAGGGGACGTACAAAGAGAACGTGGAAGTGGGCAAAAATAAGACGAATATCATGCTGATCGGAGAAGGCATGGAAGCCACGATCGTTACAGGGAGCAGAAATGTTGTAGACGGTTCCACCACTTTCAATTCCTCTACATTAGCTGCTGTGGGGAAGGGGTTTATGGCACAAGACATGGCGTTCGTCAACACTGCAGGTCCAGATAAGCATCAAGCGGTGGCTCTTCGTGTAGGATCAGACCAATCAGTGTTATATCGCTGCAAGATTGCAGCGTACCAAGACACATTGTACGCGCATTCTCTTCGCCAATTCTACAGGGAGTGTAACATTTTGGGTACTGTAGACTTCATATTTGGGAATGCCGCAGTAGTGTTTCAAAGCTGCACTATGATTCCCAGGAAACCAGGTGCAAATCAGAAAAATGCAATCACCGCACAGGGCAGAACTGATCCGAACCAGAACACAGGAACTTCCATTCACAACTGCAAGATCACCCCCGATGCCGACCTTGTTCCGGTGAAAAGCTCATTCCCAACATATCTGGGGAGGCCGTGGAAGGAGTATTCCCGAACGGTTTACATGCAGTCCTATCTAGACGATGTTATTCAGCCTGCGGGCTGGCTGGAATGGAATGGAAGTTTTGCGTTGCAAACTTTGTATTATGGAGAATACATGAATACAGGCCCAGGAGCAGCAACTGCTAACCGCGTGAAATGGGCCGGGTATCGGGTAATCACAAGTTCTCAAGAGGCGAGTAAGTTTACTGTTGGAGAATTCATACAAGGAGATTCATGGCTGCAGTCCACCGGTGTCGATTATGTCGACGGTTTAACAGAGTAG___TGACGTCGCTTCGCTAATGTTTTGACGATGTTTCGTTTTGCTGTCGAGTTGTCTTGTAGGCCATCCATGTTCCACCTATATAAATATAAATAAAATCACATGGAACTTAGTTACACTAGT

Fln Alignment:

Contig17078___VEGETRRRNRVTAMXXXXXXXXXXXXXXXXXPFKNQAEGVAAVELQNPIDTIAYVCNSTLYPDLCYSSLSPHLGLSPAQPKKLLHVALTVAMEEANKAFALVSRFVKQSMALQDCVQLMDITRDQLDSSISLLKRHDLKAFTREQSDDLQTWLSASITNQDTCLDGISDYPKSVARVLVDSNVQNLRKLVSNSLAIANAAQESRRPDSSPELRLPSDSIKDDFPSWLSAEDRRLLRSFPNDVVADVIVAQDGSGKFKTITEAIAAAPEKSSKRYVIKVKKGTYKENVEVGKNKTNIMLIGEGMEATIVTGSRNVVDGSTTFNSSTLAAVGKGFMAQDMAFVNTAGPDKHQAVALRVGSDQSVLYRCKIAAYQDTLYAHSLRQFYRECNILGTVDFIFGNAAVVFQSCTMIPRKPGANQKNAITAQGRTDPNQNTGTSIHNCKITPDADLVPVKSSFPTYLGRPWKEYSRTVYMQSYLDDVIQPAGWLEWNGSFALQTLYYGEYMNTGPGAATANRVKWAGYRVITSSQEASKFTVGEFIQGDSWLQSTGVDYVDGLT
A9NVV0_______________MEGESESRKRAIAVHAASLVLVAIIVCSALWLPLIHAEDVSSIELQDPVESVEAVCSKTLYPEICYYSLSPHLGSSPAQPKKLLHVALMIALEEANKAFALVLRFVKQTSALQDCMELMDITRDQLDSSIALLKRHDLKALMREQASDLQTWLSASITNQDTCLDGISDYSKSIARALVENSVQNVRKLISNSLAIAKAAYESR-PYPSPALRLPSDSIKDDFPSWLSPGDRRLLRTSANDVVPNVIVAQDGSGNFKTITQAIAAAPEKSPKRYVIKVKKGTYKENVQVGKTKTNIMLIGEGMEATIVTGSRNVIDGSTTFNSATFAAVGNGFMAQDMAFVNTAGPQKHQAVALRVGSDQSVLYRCKIAAYQDTLYAHSLRQFYRECKISGTVDFIFGNAAVVFQSCILVPRKPGANQKNAITAQGRTDPNQNTGISIHNCKITPGTDLVPVKSSFPTYLGRPWKEYSRTVFMQSYIDGFIQPAGWLEWDGDFALKTLYYGEYMNTGPGSGTGNRVKWPGYRVIKSPQEASKFTVGEFIQGDSWLQSTGVHYVDGLT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1194			85	14	0.993533
1595	33		66		1.0
1630		18	81		0.999994
1793		83	16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1499	1513	TGGAA TGGAA TGGAA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain