SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17065

Length: 1545 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17065

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor [Medicago sativa] emb\|CAI29265.1\| ADP-ribosylation factor 1 [Medicago truncatula]	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G62290.1	ATARFA1E, ARFA1E ADP-ribosylation factor A1E chr3:23052287-23053545 FORWARD LENGTH=181	97%
RefSeq	Arabidopsis thaliana	NP_001190162.1	ADP-ribosylation factor A1E [Arabidopsis thaliana]	97%
RefSeq	Populus trichocarpa	XP_002320274.1	predicted protein [Populus trichocarpa]	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPC8

Fln msg:

Fln protein: MGLTFTKLFQRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*

Protein Length: 183

Fln nts: AATGTAAGCTGTGGTAGCAACATGGGGAACGAAAGGTTATGCATCCTCCGGTGTCGTGAATGGAATATATTCAAATATAACCATAAATATCCCTGGAGTGAGTCCAACTTACCTTCCTCCAGCCGCATCCGTAACTGTCAACCGGAGATGCTCTGGTGATTAATCACGTTGCACTGAACGGGTGTAAACAAAGAGCTCCAAAGGAAAGAGAGTGATCTCTCCCTCTTTTCTGGGGAGGCATCGGGATTTTTCTGCGCAGTCCCTCAACAGGTCTTCTTGCATTTTCAATTTGCATTCGGAAGTTGCTCAACTCGAAGCTGAAAAA_-_ATGGGGCTCACTTTCACCAAGCTTTTCCAGCGGCTTTTTGCAAAGAAGGAGATGCGCATTCTTATGGTCGGTCTCGATGCAGCCGGAAAGACGACCATTTTGTATAAGCTCAAACTGGGAGAGATTGTTACTACTATCCCAACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATCAGCTTCACTGTTTGGGATGTTGGAGGTCAGGACAAGATCCGACCACTTTGGAGACATTACTTCCAGAATACTCAGGGTCTAATATTTGTGGTTGACAGCAATGATAGAGACCGTGTAGTTGAGGCTAGAGATGAATTGCACCGGATGCTGAATGAGGATGAACTACGTGATGCTGTCTTACTTGTATTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCAGCAGAGATCACTGATAAGCTTGGTCTGCATTCTCTGCGTCAGCGTCATTGGTATATCCAGAGCACTTGTGCAACTTCTGGTGAAGGCCTTTATGAAGGCTTGGATTGGCTTTCAAACAACATTGCCAACAAGGCATAA___ACTGGAATGCATCCAATTTCTTTATTGGGCATGAACTATATTAGCCATGAGGTAGATTCCTTCAGATTACAATGATTGAGCCACTGGCATGGATTTGCTAAAGAAGACCTTGACTCGATTCATTTTCTTGATAGCCTGATTGCTATGCATTTACCAACAACTTTGTCATTATTGTTCAAGAACCTGGGATTTTTCTTTCTGACAGTTGTGCTATATTGACTATTATAGCTCATATATATATATATATAGCTGTTATCTGTTGACTGAGAAGACTTGTATAATTAGATTTTAGAGGACTGAAAGGCTTTGCTATGTTAACTAGGAACAAATATAATGTTGCTTTCCAAATTTATTAGTTGGGAAAAACAGAAAGTAGTTCAGTATTTACATCAATATCTGAAAACTGTATCAGATATTTATATCTATAGTCTTATCCTGTTGACCAGTTGAGGTTTCCTGATTGTGAAGTTTATAGTGATAATGCTGTATGCTGCATCACTGTGAAAGCTATAGCAGTCTGTACACCTGTGTTATGTTAGTTATTAGTAGTCTTTTTGTTTTGGGATAAACAGAATGATGTACGGGAGTTAATAGTCTAGGTTGAGTTGACCTCTTTCTTCCTTTTTGAAGAGATCCGTGAACTTGCTTTCAAAAAAATGCTGGCCGTGTTTGAT

Fln Alignment:

Contig17065___MGLTFTKLFQRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
B8LPC8_______________MGLTFTKLFQRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
884		83		16	0.994512
936			33	66	0.997452
1034		33		66	0.997452
1122			83	16	0.994512
1123	16	66	16		0.988813
1124			16	83	0.994512
1202	75	25			0.996473
1285	83		16		0.994512
1290		83		16	0.994512
1393	33			66	0.997452
1475		25		75	0.996473
1491		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1103	1119	AT AT AT AT AT AT AT AT A	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain