SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17059

Length: 1859 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17059

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nuclear-localized RNA binding protein [Capsicum annuum]	-	-	6.0e-25	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Salt tolerance protein 2	-	-	4.891e-09	-

Source	Gene names
Sma3	AT4g16830; At4g16830; B1085F01.24; Ch1; GSVIVT00004557001; GSVIVT00011423001; GSVIVT00019068001; H0525G02.4; OJ1115_D04.10; OSJNBa0022J22.4; OSTLU_32668; Os01g0603000; Os01g0721900; Os05g0533100; Os05g0589600; OsI_02745; OsI_03559; OsI_17396; OsI_20751; O

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Hyaluronan/mRNA-binding protein	IPR006861	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNJ6

Fln msg:

Fln protein: MVVGAVLEAAEAGVAMRTLGTEVGVVKRTPEAGVGVEATAKRTPVAEVGVEATVRTTLLQAEGRAAAEDVDGAGAEALVVVVVDASVEAATAMATMPMDRTALPVNSSKTPIPSQAQATGIPLKCQLLMKLKMWSLNRRNQKKRLHQGLPLKIKITKKRRTMK*

Protein Length: 165

Fln nts: CGTCGTGACCATGCCTACTCACGCAACATTTATGCATATGTCTTTTGTTGTCACTATTCTTCCTTAATCCCCACTCTGCCTGCCTGGAGAGAAGAGGAGAGGACCCTGCCCTGCTATTTGGCCTTGTGAGCGATTCAGGAGAAATGGGGTGGCAACAGCAGCAGGGAGGAGAGAATGAAAATTGAATAGGACGAAGGATCTGAATCCCCCTTGCGCGCAAGCAATGGCTCGAGAGACCAATTCTTTTGCCCTACTGGGCGGAGATGACGACCAAGGCGATGATGATCTCATGGCACTCATCAACAGCGCGGCCACCCTGAAGACAGAAAAGAAGCCCAAGACTACTGCCAAGAAAAACGGCCAGCAGCAGCCGCCGCCCCCTCAGTCTCAGCCTGCTAAACTCCCTTCCAAACCCCTTCCGCCCGCCGAGGCCGTGAGGGCGGATAGAGGAAGAGGAAGGGGCGGGCGGGGCCGCGGTGGAGGCCGTGGCAGCCGCTTTGAAGGCGGTGAATACAACACCGAGAGCAACGGAT_-_ATGGTGGTGGGGGCGGTTTTGGAGGCGGCCGAGGCTGGGGTCGCGATGAGGACTCTGGGAACCGAGGTTGGGGTCGTGAAGAGGACACCGGAGGCCGGGGTTGGGGTCGAAGCAACGGCGAAGAGGACACCGGTGGCCGAGGTTGGAGTCGAAGCAACAGTGAGGACGACGCTGCTGCAGGCGGAGGGCAGAGCCGCGGCAGAGGACGTGGACGGGGCAGGGGCCGAGGCTTTGGTGGTCGTGGTAGTGGACGCTTCGGTGGAGGCGGCGACAGCTATGGCTACGATGCCAATGGACAGGACCGCCCTCCCCGTCAACAGTTCGAAGACACCAATACCTTCACAGGCACAGGCAACTGGGATACCCCTGAAGTGTCAGTTGTTGATGAAGCTAAAAATGTGGAGCCTGAACAGAAGAAACCAGAAGAAGAGGTTACACCAGGGGTTGCCTCTGAAAATAAAGATAACAAAGAAGAGGAGGACAATGAAATGA___CTCTTGATGAGTATGAGAAATTATTGAATGAGAAAAGAAAAACATTGGAAGCTCTAAAAAATGCGGAAAGAAAGGTTATTCTGGACAGAGATTTCGAGAAAATGCAGCTTGTTGATAAGAAAAATGATGGCATTTTCATCAAACTGAACTCAGAAAAGGAGAGACAAAGAAAGAAGGAGACCCTTGAAAAAGAGGAAAAAGCCCGTAAGTCTGTGAGCATAAATGAGTTTTTGAAACCAGCTGATGGTGAGAGATATTTTACCCCATCTGGCACTCGTGGGCGTGGGCGTGGGCGTGGACGAGGCCGTGGGGACGGTGTTAGCACTAGAGGAGGTTTTGGAGGGAGGTACAGTGATGCTGATCAGGTTGCTGCTCCTTGCATTGAGGATCCTGGACAGTTTCCAGTACTGGGTGGGAAGTAATGTTATCAGCATCACTAAGTGCGCTTTTTGTTAGCTAAATTAGGTTTTGTTCTGTAAGTCTATCACAATTACAAAGGCAAACTGTCTTCCGCGAACAAAGACCTCATTAGTGGAAACAAGTTTTATTAATATTTATAAAGTTTTAATGATATATTAATATTGCAAATTGGGAAGATTTTAGGCTAAGTACAAATTAAAATTATTTGTTAAACTTGGTTGAGTATTTGATAGAAATTCAAAAAAGCTTTTACTAAATGGTGACACCTGTTTTTGTTTGAAGACACCCCTCTCCGTATAACTAGTATCACTTCGGTTCTATATTATAAATCTTGTTCTATAGCTTTATGAGCAGAATCATTATATTGTATTCCTAATTGTTTTTGAATTTTGAATGGGGCACTGCTGAGGAGAC

Fln Alignment:

Contig17059___RTLGTEVGVVKRTPEAGVGVEATAKRTPVAEVGVEATV-RTTLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-MATMPMDRTALPVNSSKTPIPSQAQATGIPLKCQLLMKLKMWSLNRRN
A9NNJ6_______________RILGAEVGVVKRTPEAEVGVEAMPKRIPVAEVGVEATVTRTTLVQAEGRAVAEVVDGAGVEASVVVVDALAEVEVEVAMATMPMDRTALPVNSSKTPLPLQAQATGMPLKRHLLMKLKVWSLNRKN

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
785	10		89		1.0
938	4	95			0.996252
941	93		6		0.999999
942	95		4		0.996599
1191	85			14	0.993533
1192	85		14		0.993533
1194	85		14		0.993533
1320		12		87	0.992554
1321		12	87		0.992554
1322		12	87		0.992554
1477	4			88	0.999991
1478			4	95	0.996599
1483	95		4		0.996599
1596		2		97	0.972772
1598			2	97	0.975753
1675		37		62	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1301	1323	CGTGGG CGTGGG CGTGGG CGTGG	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain