SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17057

Length: 2046 nt

UniGene Fasta

>sp_v3.0_unigene17057
TACTATTGGGGTTGTGCCACACAGCCAAGCTAAAGCAAGGTCTGTGGATTTCCGGAATCTCTAGATCTGGGCTAACATCCGGATCATTTCTCCTTCCCATTTTTTCATCTGGGCATCACTAGTGTGCCCTTTCCTACTTTGGGTTTGCTATTGCATTTCCTTGTTTCGTTCTGAACAATGGATCCCGTGAACGTATGGGGCAACACGCCACTGAAGGTTGTGGACGAGGAGATCTTTGATCTGATTGAGAAGGAGAAGAGAAGGCAATGCAGGGGAATCGAACTCATAGCCTCCGAGAACTTCACATCCCTGGCAGTCATTGAAGCTCTTGGAACCCCCCTCACAAACAAATACTCCGAGGGCATGCCTGGCAACAGATACTACGGTGGTAACGAATACATAGATCTCATTGAAAATCTGTGCAGATCAAGGGCCCTCCAGGCCTTCCATCTGGATTCCGAGAAATGGGGTGTGAATGTGCAGCCCTACTCTGGGAGCCCCGCTAACTTCGCAGCCTACACAGCCCTGCTGAACCCACATGACCGCATCATGGGGCTGGATTTGCCTTCTGGTGGCCATCTCACTCATGGATATTACACCTCTGGTGGCAAGAAGATTTCTGCTACATCTATTTACTTTGAGAGTTTGCCTTACAAGGTCAGCCAGGAGACTGGGTTCATTGATTATGACAAGCTGGAGGAGAAAGCCTTGGATTTCAGGCCTAAGCTTATTATATGTGGAGGAAGTGCTTATCCCAGGGACTGGGATTATGCTAGGTTCCGTTCCATTGCTGACAAATGTGGTGCCATGCTCTTATGTGATATGGCTCACATCAGTGGCCTTGTTGCTGCTCAGGAAGCTGGAAATCCATTTGACTATTGTGATTTGGTTACCACAACCACCCACAAGAGTTTGAGGGGTCCAAGAGCAGGGATGATCTTCTATAGGAAAGGCCCAAAGCCTCCTAAAAAGGGACAGCCAGAAGGTGCCCTCTATGATTACGAGGACAGAGTAAACTTTTCTGTGTTTCCGTCCCTTCAAGGAGGGCCACACAACCACCAGATTGCAGCATTGGCTGTGGCTCTTAAGCAGGTTATGACTCCTGGTTTTAAGGCCTATGCCAAACAGGTCAAGGCAAATGCGGTTGCTGTTGGTAACTACTTGATGAGCAAGGGATACAAGCTTGTTACAAGTGGGACAGAAAATCATCTAGTTCTGTGGGATCTCCGGCCAATTGGACTGACTGGAAATAAGGTGGAGAAAGTGTGTGACCTGTGTAATATAACAATCAACAAGAATGCAGTTTATGGTGACAGTAGTGCTCTGTCCCCTGGGGGTGTTCGTATTGGTACCCCTGCTATGACCTCCAGAGGTCTGAAGGAAGCTGATTTTGAGCAGATTGGAGAGTTCCTCCACCAGTCTATTATCATCACTTTGGCTATCCAGAGCGAACATGGGAAGCTTCTCAAGGACTTCAACAAAGGTTTGGCGGGCAACAAGGACATTGAAAATCTGAAAGCTCAAGTGGAGAAATTCTCTGCACAGTTTGATATGCCTGGCTTTGATGTAGCTACAATGAAGTTCCAATAAGTGATCATAGGAATAGCATAATTCCTTTTCCTTTTGGGTGCATTGCTGTTAGCATTAAAAGTTGGTAGCTAGAGGGATATATTCTATAGCTTGATGAATAAATATGTATTGCTCGTGAGTTTCACAGTCCTCAAAATTTGAGGACTTATTTACTGGCGTAATCAGTAGAAGATGACTAAATTTAGTAGTCAGATGTGTTGAATTGATTTTTCAGTTAAACATACACGAAGTCTAGTCTTTTTCCGGCGTCATCTTTGTAATCTTCTGCTTTTGTTTACATGTCCCATGCATTGGGCAAATTCTGCTATTGGAGCTATGCAATCTTATTTTGTTAGCCGATTAAAAGAAATACTTATATGTAAAATGGTGATAGTTCTCTATCGGTTTAAATAAACAAGTTACTTTTGTGACTAGAGGGGAACTATACATAGACCCATATTTTTTTTAAAATAAAAA

Ace file of the UniGene sp_v3.0_unigene17057

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine hydroxymethyltransferase n=2 Tax=Picea sitchensis RepID=B8LLP6_PICSI	-	-	0.0	95%
FL-Next	sp=Serine hydroxymethyltransferase; Pinus pinaster (Maritime pine).	-	-	0.0	99%

Source	ECs	Term	Type	e value	Identity
Sma3	Glycine hydroxymethyltransferase.	EC:2.1.2.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycine, serine and threonine metabolism	00260	%
Sma3	Cyanoamino acid metabolism	00460	%
Sma3	One carbon pool by folate	00670	%
Sma3	Methane metabolism	00680	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	InterPros	Term	Type	e value	Identity
Sma3	Serine hydroxymethyltransferase	IPR001085	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G13930.1	SHM4 serine hydroxymethyltransferase 4 chr4:8048013-8050021 REVERSE LENGTH=471	83%
RefSeq	Arabidopsis thaliana	NP_193129.1	serine hydroxymethyltransferase 4 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002298678.1	serine hydroxymethyltransferase 1 [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G3C904

Fln msg:

Fln protein: MDPVNVWGNTPLKVVDEEIFDLIEKEKRRQCRGIELIASENFTSLAVIEALGTPLTNKYSEGMPGNRYYGGNEYIDLIENLCRSRALQAFHLDSEKWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAHISGLVAAQEAGNPFDYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGALYDYEDRVNFSVFPSLQGGPHNHQIAALAVALKQVMTPGFKAYAKQVKANAVAVGNYLMSKGYKLVTSGTENHLVLWDLRPIGLTGNKVEKVCDLCNITINKNAVYGDSSALSPGGVRIGTPAMTSRGLKEADFEQIGEFLHQSIIITLAIQSEHGKLLKDFNKGLAGNKDIENLKAQVEKFSAQFDMPGFDVATMKFQ*

Protein Length: 472

Fln nts: TACTATTGGGGTTGTGCCACACAGCCAAGCTAAAGCAAGGTCTGTGGATTTCCGGAATCTCTAGATCTGGGCTAACATCCGGATCATTTCTCCTTCCCATTTTTTCATCTGGGCATCACTAGTGTGCCCTTTCCTACTTTGGGTTTGCTATTGCATTTCCTTGTTTCGTTCTGAACA_-_ATGGATCCCGTGAACGTATGGGGCAACACGCCACTGAAGGTTGTGGACGAGGAGATCTTTGATCTGATTGAGAAGGAGAAGAGAAGGCAATGCAGGGGAATCGAACTCATAGCCTCCGAGAACTTCACATCCCTGGCAGTCATTGAAGCTCTTGGAACCCCCCTCACAAACAAATACTCCGAGGGCATGCCTGGCAACAGATACTACGGTGGTAACGAATACATAGATCTCATTGAAAATCTGTGCAGATCAAGGGCCCTCCAGGCCTTCCATCTGGATTCCGAGAAATGGGGTGTGAATGTGCAGCCCTACTCTGGGAGCCCCGCTAACTTCGCAGCCTACACAGCCCTGCTGAACCCACATGACCGCATCATGGGGCTGGATTTGCCTTCTGGTGGCCATCTCACTCATGGATATTACACCTCTGGTGGCAAGAAGATTTCTGCTACATCTATTTACTTTGAGAGTTTGCCTTACAAGGTCAGCCAGGAGACTGGGTTCATTGATTATGACAAGCTGGAGGAGAAAGCCTTGGATTTCAGGCCTAAGCTTATTATATGTGGAGGAAGTGCTTATCCCAGGGACTGGGATTATGCTAGGTTCCGTTCCATTGCTGACAAATGTGGTGCCATGCTCTTATGTGATATGGCTCACATCAGTGGCCTTGTTGCTGCTCAGGAAGCTGGAAATCCATTTGACTATTGTGATTTGGTTACCACAACCACCCACAAGAGTTTGAGGGGTCCAAGAGCAGGGATGATCTTCTATAGGAAAGGCCCAAAGCCTCCTAAAAAGGGACAGCCAGAAGGTGCCCTCTATGATTACGAGGACAGAGTAAACTTTTCTGTGTTTCCGTCCCTTCAAGGAGGGCCACACAACCACCAGATTGCAGCATTGGCTGTGGCTCTTAAGCAGGTTATGACTCCTGGTTTTAAGGCCTATGCCAAACAGGTCAAGGCAAATGCGGTTGCTGTTGGTAACTACTTGATGAGCAAGGGATACAAGCTTGTTACAAGTGGGACAGAAAATCATCTAGTTCTGTGGGATCTCCGGCCAATTGGACTGACTGGAAATAAGGTGGAGAAAGTGTGTGACCTGTGTAATATAACAATCAACAAGAATGCAGTTTATGGTGACAGTAGTGCTCTGTCCCCTGGGGGTGTTCGTATTGGTACCCCTGCTATGACCTCCAGAGGTCTGAAGGAAGCTGATTTTGAGCAGATTGGAGAGTTCCTCCACCAGTCTATTATCATCACTTTGGCTATCCAGAGCGAACATGGGAAGCTTCTCAAGGACTTCAACAAAGGTTTGGCGGGCAACAAGGACATTGAAAATCTGAAAGCTCAAGTGGAGAAATTCTCTGCACAGTTTGATATGCCTGGCTTTGATGTAGCTACAATGAAGTTCCAATAA___GTGATCATAGGAATAGCATAATTCCTTTTCCTTTTGGGTGCATTGCTGTTAGCATTAAAAGTTGGTAGCTAGAGGGATATATTCTATAGCTTGATGAATAAATATGTATTGCTCGTGAGTTTCACAGTCCTCAAAATTTGAGGACTTATTTACTGGCGTAATCAGTAGAAGATGACTAAATTTAGTAGTCAGATGTGTTGAATTGATTTTTCAGTTAAACATACACGAAGTCTAGTCTTTTTCCGGCGTCATCTTTGTAATCTTCTGCTTTTGTTTACATGTCCCATGCATTGGGCAAATTCTGCTATTGGAGCTATGCAATCTTATTTTGTTAGCCGATTAAAAGAAATACTTATATGTAAAATGGTGATAGTTCTCTATCGGTTTAAATAAACAAGTTACTTTTGTGACTAGAGGGGAACTATACATAGACCCATATTTTTTTTAAAATAAAAA

Fln Alignment:

Contig17057___MDPVNVWGNTPLKVVDEEIFDLIEKEKRRQCRGIELIASENFTSLAVIEALGTPLTNKYSEGMPGNRYYGGNEYIDLIENLCRSRALQAFHLDSEKWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAHISGLVAAQEAGNPFDYCDLVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGALYDYEDRVNFSVFPSLQGGPHNHQIAALAVALKQVMTPGFKAYAKQVKANAVAVGNYLMSKGYKLVTSGTENHLVLWDLRPIGLTGNKVEKVCDLCNITINKNAVYGDSSALSPGGVRIGTPAMTSRGLKEADFEQIGEFLHQSIIITLAIQSEHGKLLKDFNKGLAGNKDIENLKAQVEKFSAQFDMPGFDVATMKFQ
G3C904_______________MDPVNVWGNTPLKVVDEEIFDLIEKEKRRQCRGIELIASENFTSLAVIEALGTPLTNKYSEGMPGNRYYGGNEYIDLIENLCRSRALQAFHLDSEKWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVSQETGFIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRSIADKCGAMLLCDMAHISGLVAAQEAGNPFDYCDLVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGALNDYEDRVNFSVFPSLQGGPHNHQIAALAVALKQVMTPGFKAYAKQVKANAVAVGNYLMSKGYKLVTSGTENHLVLWDLRPIGLTGNKVEKVCDLCNITINKNAVYGDSSALSPGGVRIGTPAMTSRGLKEADFEQIGEFLHQSIIITLAIQSEHGKLLKDFNKGLAGNKDIENLKAQVEKFSAQFDMPGFDVATMKFQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
905	11	88			0.993486
908		88	11		0.993486
1000	20			80	0.995493
1134			88	11	0.992527
1136			9	90	0.90298
1137		90	9		0.90298
1143	90		9		0.90298
1586	84		15		0.999986
1806		5		94	1.0
1997	95		4		0.997494
2005	6		93		0.99903
2008		35		64	1.0
2010	28		42		1.0
2012	28	28	42		1.0
2013	60		40		1.0
2015	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain