SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17035

Length: 1238 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17035

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L10 n=2 Tax=Pinaceae RepID=RL10_PINTA	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G26910.1	RPL10B Ribosomal protein L16p/L10e family protein chr1:9321709-9322813 FORWARD LENGTH=221	86%
RefSeq	Arabidopsis thaliana	NP_174013.1	60S ribosomal protein L10-2 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002326063.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPT9

Fln msg:

Fln protein: MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGAKKRLADEFPFCVHLVSWEKENVTSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCRDNHSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKYTRADYLKWKSENRIVPDGVNAKLLGCRGPLSNRKPGQAFLKPAVMLSSDLVA*

Protein Length: 230

Fln nts: ATGGGGAGTTTCATTTTCCTATCAGGTCTGGTTTCTCTCAAACAAGTTCAACTCCATAGACTCTTCCTCGTGGCACCTCACTCTAACCAGTTTTCTAAGTTTAATATACATATACCTTCAACGATAGTGTAACCTTAGGACAAACACAGCCCAAGTTGCGTAAGCCCTAGGACTTCTATCAAACATTGCCGTCTCCAGGACTATAAAGTGACCATTTGGACGTAGCCAATTCCATTTCTGAAGTTTCAAGAGCAAGCTCTTCATTTTCAATCCAGCTACAAGATTTATTAGGTTCAGTGATTCTTTCTACGCATCCGAAAGTCGGGTACTTCCAGCAGATTTC_-_ATGGGGAGACGTCCAGCGAGATGCTATCGTCAGATAAAGAACAAACCCTATCCGAAATCTCGATACTGTCGTGGTGTTCCGGATCCCAAAATCCGCATATACGATGTCGGTGCGAAGAAGAGATTGGCCGACGAGTTCCCTTTCTGTGTCCACCTGGTGAGTTGGGAGAAGGAAAATGTAACGAGCGAGGCACTGGAAGCGGCTCGTATTGCATGTAACAAATACATGGCTAAGTTCGCCGGAAAGGATGCATTTCACCTACGAGTTCGCGTTCATCCATTCCATGTTCTCCGTATTAACAAGATGCTTTCATGCGCTGGAGCCGATAGGCTGCAAACTGGAATGAGAGGAGCATTTGGAAAACCTCAGGGAACATGTGCACGTGTTGCCATAGGTCAAGTCCTCCTTTCAGTACGATGCCGGGACAATCACTCAAATCATGCTCAAGAAGCTCTGCGTCGTGCCAAGTTCAAGTTCCCTGGTAGACAGAAAATTATCGTGAGCAGAAAATGGGGTTTCACCAAGTACACCAGAGCTGACTACTTGAAGTGGAAGTCAGAAAACAGAATTGTTCCTGATGGTGTGAATGCCAAGTTGCTTGGTTGCCGAGGTCCATTATCCAATCGAAAACCTGGGCAGGCATTTCTGAAGCCTGCCGTTATGTTGTCATCTGATCTAGTTGCTTAG___ATTAGTGCTTTAGTATGGTTGATAAACAGAGAACCTAAAAAGTTTGGCCTTAGTACATTAAGGCATCGATTGGGTCAATCCACAATTTTTTGATGACTGCTTATTTTTATTAAGATATTTGTGAACATGTTTATCATATCGTTCCTGATATTTTTATTCATGGTTAAATTTTTGTTTTTATATAAAGAATTTATTACAGTTTACACTT

Fln Alignment:

Contig17035___MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGAKKRLADEFPFCVHLVSWEKENVTSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCRDNHSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKYTRADYLKWKSENRIVPDGVNAKLLGCRGPLSNRKPGQAFLKPAVMLSSDLVA
A9NPT9_______________MGRRPARCYRQIKNKPYPKSRYCRGVPDSKIRIYDVGAKKRLADEFAFCVHLVSWEKENVTSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCRDNHSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFTRADYLKWKSESRIVPDGVNAKLLGCRGPLSNRKPGQAFLKPALVSSSDIVA

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
904	95			0	1.0
910			96	0	0.999921
920		1		97	0.990108
921		1	98		0.999934
924			98	1	0.984735
978		0	96		0.992151
1068	85	1			1.0
1117		2		70	1.0
1165	9	27		63	1.0
1166		88		11	0.923564
1168	14	14		71	0.984337

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain