SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17017

Length: 1968 nt

UniGene Fasta

>sp_v3.0_unigene17017
CGTCGTGACCTTGGCTGTCACTCATGTTCCTGTTTCCTCAGTGCTATGCAGAGAAACAAGCTTTGGGAGAAGTGAACGAAGAGATATTAGACACTCAAGTTTATCCTGGTGTGTGGGAAATCAGTGGCCACGTGGCTTTGAAGTGGAAGCAAGACTTTGACAGGGCTTCTGAGGACTATGCATGGAAATTACTTGCTGAAGCCTCTCTGTCAGAGGAAAGATTTGAAGAAGTTAAAGCTTATATTTTGGAAGCAGCAGCTACTGAGGAGGTGCAAGTAGAAGAAGAGGAACATGCTGATATTGTTGTGGAAGATGGGGTTCCTCTTTACGATTCCTCGAAGAATACCATAATGCCCCTATGCACATGAATGAAGGATTCGTGCCACCGTGATCGAACTATTTACTTTCTGTTTTCAAAACTATCATCAGAAGGAGGAGGTTTCTGCGCCGTAGGGACGCTGTTGGTGCACTAGAGAGGACTACGTCGCCGCACGGCGGAAGAGGAGCTTTGCCCTCGGAAGGGGGAAGCCCATCTGATCTCCAGTTTCTTGCAGGAGGTGGTCGTCAGCTTGCCCTTTTCTTCCTCGCCCATCCATTTCTTCTGAGCGAAGAAGTTTGGGAGAGGGAGAGGTAGTTAGGCGTCCATCAATTGCTCATATTATTTGTTAACAACCATGTTGACCATAAAAAGATGCCCCACTATTCTATCTAACTACCAGGAGGGTTCTGAAGGGCTGGGCTGCGGCCGTAACTGTTTAGGCCAGTGCTGTGTTCCAGGCTCGAAGTTGCCTTTGTATACCTTCAAGAGAAGGCACACCATTGCTGGAGAGAAACACGTAGATAATGATGTTAAATTGACAGATGTTCCTTCCCTTGACAGTCTGCTTCTTGGGCTGTGGGAGGAAAGGATGCAGAGGGGTTTGTTCCGCTATGATGTTACTAATTGTGAAACCAAGGTCATCCCTGGTAATTATGGCTTCATTGCTCAGCTGAATGAAGGGCGCCATCTTAAAAAACGTCCCACTGAATATCGAGTGGACAAGGTGCTGCAGGACTTTGATCCCTGTAAATTCAACTTCACTAAAGTAGGGCAGGAAGAGGTGCTCTTCCGTTTTGAAGAAAGTGAGGAAGAGAAAGTTCAGTACATGGAAAAGGCCCCTGTCTTGGACAGTCCAAACGTGATTGCTATCAATGTGAGTCCAGTTGAATATGGGCATGTGCTTCTTGTGCCAAGAGTGTTGGACTGCTTACCCCAACGCATCGACCATGATAGCTTACTGTTAGCTCTGCATTTGGCTGTGGAGGCTGGCAACCCATCTTTTCGCCTTGGCTACAATAGCCTGGGAGCATTTGCATCTATAAACCATCTGCACTTCCAGGCTTATTACTTGGCTCATCCTTTCCCTGTTGAAAAATCACCAACGAAAAGAGTACCATGGAAGTCTGAGAAAACTGGGGTCAAGATATTTGAACTCTGCAACTACCCTGTTAGAGGCCTAGTTATTGAAGGGGGTAATACTTTGGAAGATCTCTGTAATGCCGTTGGCAGCTCCTGCATCTGTCTACAAGATAACAACATACCATACAACGTGCTCATTGCAGATTGCGGCAAAAGAGTTTTTCTGTTTCCTCAGTGCTATGCAGAGAAACAAGCTTTGGGAGAAGTGAACGAAGAGATATTAGACACTCAAGTTTATCCTGGTGTGTGGGAAATCAGTGGCCACGTGGCTTTGAAGTGGAAGCAAGACTTTGACAGGGCTTCTGAGGACTATGCATGGAAATACTTGCTGAAGCCTCTCTGTCAGAGGAAAGATTTGAAGAAGTTAAAGCTTATATTTTGGAAGCAGCAGTTACTGAGGAGGTGCAAGTAGAAGAAGAGGAACATGCTGATATTGTTGTGGAAGATGGGGTTCCTCTTTACGATTCTCGAAGAATACCATAATGCCCCTATGCACATGAATGAAGGAT

Ace file of the UniGene sp_v3.0_unigene17017

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	VTC2-like protein n=1 Tax=Malus x domestica RepID=C0LQ97_MALDO	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	VTC2-like protein	-	-	1.228e-13	-

Source	Gene names
Sma3	AT4g26850; At4g26850; At5g55120; B1065G12.8; CHLREDRAFT_113717; F10M23.190; GSVIVT00022399001; GSVIVT00027274001; LOC_Os12g08810; MICPUCDRAFT_63706; MICPUN_64582; OSTLU_3702; Os01g0901300; Os12g0190000; OsI_04811; OsI_37726; OsJ_04435; OsJ_35472; Ot04g054

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	mannose-1-phosphate guanylyltransferase (GDP) activity	GO:0008928	Molecular Function	-
Sma3	GDP-galactose:mannose-1-phosphate guanylyltransferase activity	GO:0010471	Molecular Function	-
Sma3	GDP-galactose:glucose-1-phosphate guanylyltransferase activity	GO:0010472	Molecular Function	-
Sma3	GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	GO:0010473	Molecular Function	-
Sma3	glucose-1-phosphate guanylyltransferase (GDP) activity	GO:0010474	Molecular Function	-
Sma3	galactose-1-phosphate guanylyltransferase (GDP) activity	GO:0010475	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Stigma-specific protein Stig1	IPR006969	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G26850.1	" VTC2 mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltra	62%
RefSeq	Arabidopsis thaliana	NP_567759.1	GDP-L-galactose phosphorylase [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002298816.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLJ1

Fln msg: Overlapping hits, possible frame ERROR between 1829 and 1778, your sequence is longer than subject: 640 - 431

Fln protein: MFLFPQCYAEKQALGEVNEEILDTQVYPGVWEISGHVALKWKQDFDRASEDYAWKLLAEASLSEERFEEVKAYILEAAATEEVQVEEEEHADIVVEDGVPLYDSSKNTIMPLCT*MKDSCHRDRTIYFLFSKLSSEGGGFCAVGTLLVH*RGLRRRTAEEELCPRKGEAHLISSFLQEVVVSLPFSSSPIHFF*AKKFGRGRGS*ASINCSYYLLTTMLTIKRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRRHTIAGEKHVDNDVKLTDVPSLDSLLLGLWEERMQRGLFRYDVTNCETKVIPGNYGFIAQLNEGRHLKKRPTEYRVDKVLQDFDPCKFNFTKVGQEEVLFRFEESEEEKVQYMEKAPVLDSPNVIAINVSPVEYGHVLLVPRVLDCLPQRIDHDSLLLALHLAVEAGNPSFRLGYNSLGAFASINHLHFQAYYLAHPFPVEKSPTKRVPWKSEKTGVKIFELCNYPVRGLVIEGGNTLEDLCNAVGSSCICLQDNNIPYNVLIADCGKRVFLFPQCYAEKQALGEVNEEILDTQVYPGVWEISGHVALKWKQDFDRASEDYAxxxxxxxxxxxxxxxxxxxYILEAAVTEEVQVEEEEHADIVVEDGVPLYDSRRIP*

Protein Length: 641

Fln nts: CGTCGTGACCTTGGCTGTCACTC_-_ATGTTCCTGTTTCCTCAGTGCTATGCAGAGAAACAAGCTTTGGGAGAAGTGAACGAAGAGATATTAGACACTCAAGTTTATCCTGGTGTGTGGGAAATCAGTGGCCACGTGGCTTTGAAGTGGAAGCAAGACTTTGACAGGGCTTCTGAGGACTATGCATGGAAATTACTTGCTGAAGCCTCTCTGTCAGAGGAAAGATTTGAAGAAGTTAAAGCTTATATTTTGGAAGCAGCAGCTACTGAGGAGGTGCAAGTAGAAGAAGAGGAACATGCTGATATTGTTGTGGAAGATGGGGTTCCTCTTTACGATTCCTCGAAGAATACCATAATGCCCCTATGCACATGAATGAAGGATTCGTGCCACCGTGATCGAACTATTTACTTTCTGTTTTCAAAACTATCATCAGAAGGAGGAGGTTTCTGCGCCGTAGGGACGCTGTTGGTGCACTAGAGAGGACTACGTCGCCGCACGGCGGAAGAGGAGCTTTGCCCTCGGAAGGGGGAAGCCCATCTGATCTCCAGTTTCTTGCAGGAGGTGGTCGTCAGCTTGCCCTTTTCTTCCTCGCCCATCCATTTCTTCTGAGCGAAGAAGTTTGGGAGAGGGAGAGGTAGTTAGGCGTCCATCAATTGCTCATATTATTTGTTAACAACCATGTTGACCATAAAAAGATGCCCCACTATTCTATCTAACTACCAGGAGGGTTCTGAAGGGCTGGGCTGCGGCCGTAACTGTTTAGGCCAGTGCTGTGTTCCAGGCTCGAAGTTGCCTTTGTATACCTTCAAGAGAAGGCACACCATTGCTGGAGAGAAACACGTAGATAATGATGTTAAATTGACAGATGTTCCTTCCCTTGACAGTCTGCTTCTTGGGCTGTGGGAGGAAAGGATGCAGAGGGGTTTGTTCCGCTATGATGTTACTAATTGTGAAACCAAGGTCATCCCTGGTAATTATGGCTTCATTGCTCAGCTGAATGAAGGGCGCCATCTTAAAAAACGTCCCACTGAATATCGAGTGGACAAGGTGCTGCAGGACTTTGATCCCTGTAAATTCAACTTCACTAAAGTAGGGCAGGAAGAGGTGCTCTTCCGTTTTGAAGAAAGTGAGGAAGAGAAAGTTCAGTACATGGAAAAGGCCCCTGTCTTGGACAGTCCAAACGTGATTGCTATCAATGTGAGTCCAGTTGAATATGGGCATGTGCTTCTTGTGCCAAGAGTGTTGGACTGCTTACCCCAACGCATCGACCATGATAGCTTACTGTTAGCTCTGCATTTGGCTGTGGAGGCTGGCAACCCATCTTTTCGCCTTGGCTACAATAGCCTGGGAGCATTTGCATCTATAAACCATCTGCACTTCCAGGCTTATTACTTGGCTCATCCTTTCCCTGTTGAAAAATCACCAACGAAAAGAGTACCATGGAAGTCTGAGAAAACTGGGGTCAAGATATTTGAACTCTGCAACTACCCTGTTAGAGGCCTAGTTATTGAAGGGGGTAATACTTTGGAAGATCTCTGTAATGCCGTTGGCAGCTCCTGCATCTGTCTACAAGATAACAACATACCATACAACGTGCTCATTGCAGATTGCGGCAAAAGAGTTTTTCTGTTTCCTCAGTGCTATGCAGAGAAACAAGCTTTGGGAGAAGTGAACGAAGAGATATTAGACACTCAAGTTTATCCTGGTGTGTGGGAAATCAGTGGCCACGTGGCTTTGAAGTGGAAGCAAGACTTTGACAGGGCTTCTGAGGACTATGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATATTTTGGAAGCAGCAGTTACTGAGGAGGTGCAAGTAGAAGAAGAGGAACATGCTGATATTGTTGTGGAAGATGGGGTTCCTCTTTACGATTCTCGAAGAATACCATAA___TGCCCCTATGCACATGAATGAAGGAT

Fln Alignment:

Contig17017___MFLFPQCYAEKQALGEVNEEILDTQVYPGVWEISGHVALKWKQDFDRASEDYAWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
B8LLJ1_______________VFLFPQCYAEKQALGEVDQEILDTQVNPAVWEISGHMVLKRKQDFDRASEDYAWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
368	66	33			1.0
380	63		36		1.0
391	50		50		1.0
496		66		33	0.997452
523		33	66		0.997452
1135	80		20		0.995493
1226		16		83	0.994512
1278	14	85			0.993533
1308		16	83		0.994512
1341	50	50			1.0
1363	50		50		1.0
1366	75		25		0.996473
1395		50		50	1.0
1396	50		50		1.0
1435		80	20		0.995493
1503	66			33	1.0
1512	33		66		1.0
1538		28		71	1.0
1574		88		11	0.923564
1575	88		11		0.923564
1576	88			11	0.923564
1597	10			90	0.90298
1601	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain