SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17013

Length: 1447 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17013 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class III peroxidase PSYP1 n=1 Tax=Pinus sylvestris RepID=Q9FYS6_PINSY	-	-	86%
FL-Next	tr=Class III peroxidase PSYP1; Pinus sylvestris (Scots pine).	-	-	86%
Sma3	Class III peroxidase PSYP1	-	-	-

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G71695.1	Peroxidase superfamily protein chr1:26964359-26966557 FORWARD LENGTH=358	52%
RefSeq	Arabidopsis thaliana	NP_177313.1	peroxidase 12 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002306715.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9FYS6

Fln msg:

Fln protein: MGSQRPSNFAELDLDRRRYYISKKEANMSPATVLLSIFVIVYGSAVKALPTPVAGLSWTFYNTSCPSLESIVRQRMEAYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNSTSGEQTVAPNLSLRAEALKIINDIKENVEAACSGTVSCADILALAARDSVDIAGGPCYPIPLGRRDSLTFANSTTVLANLPGPTSNVTHLISIFGPKGLNNTDLVALSGGHTIGRGNCSSFDNRLYNSTTGSQMQDPTMDQTFAKNLYLTCPTSTTVNTTKLDIRTPNLFDNKYYVNLLNRQTLFTSDQSLYSDSRTRQIVINFAVNQTLFFEEFVLGMLKMGQLDVLTGSEGEIRNNCWASNPSTYSILEAEASQESSSYSM*

Protein Length: 376

Fln nts: CGTCGTGACCTTGGCTGTC_-_ATGGGATCTCAAAGGCCCAGCAATTTCGCTGAACTGGATCTGGATCGAAGAAGGTATTACATATCAAAGAAAGAGGCAAATATGAGTCCGGCCACTGTTTTGCTTTCTATATTTGTGATTGTATATGGTAGCGCTGTGAAAGCTCTGCCAACTCCCGTGGCGGGTCTTTCCTGGACGTTCTACAACACGAGTTGCCCGTCGTTGGAGTCGATAGTGCGGCAGCGCATGGAAGCCTATTTGAGTGCAGACATCACACAAGCTGCAGGATTGCTCAGGCTCCACTTCCACGACTGTTTTGTCCAGGGATGCGACGGGTCTGTGTTGCTGAACTCAACATCGGGGGAGCAAACAGTTGCGCCCAACTTATCACTGAGAGCGGAGGCTCTGAAAATCATCAATGACATCAAAGAGAACGTAGAAGCGGCGTGCAGCGGAACTGTGTCGTGTGCTGACATTCTTGCCTTAGCGGCCCGTGACTCCGTCGACATAGCTGGAGGGCCATGCTATCCCATACCACTCGGCCGCAGGGACAGCCTTACCTTCGCCAATAGTACGACCGTTCTCGCCAATTTGCCTGGCCCGACCTCCAACGTAACGCACCTTATCAGCATTTTCGGTCCCAAAGGCTTGAATAACACAGATCTGGTGGCCCTTTCAGGAGGACACACGATTGGCAGAGGCAACTGCTCCTCCTTCGATAACAGACTATATAATAGCACCACTGGTTCACAAATGCAGGATCCCACGATGGACCAGACTTTCGCTAAGAATCTTTATCTCACCTGTCCTACCAGTACTACCGTTAACACCACCAAATTGGATATTCGCACTCCCAATTTGTTCGACAACAAATACTATGTCAATCTCCTCAACAGGCAGACCCTCTTCACGTCCGACCAGAGTCTCTACAGCGACAGTCGAACCCGCCAGATTGTGATCAACTTTGCGGTGAATCAGACCCTTTTCTTTGAAGAATTTGTGCTGGGTATGCTGAAAATGGGTCAGCTGGATGTGCTCACAGGAAGCGAAGGAGAGATCCGTAACAACTGCTGGGCTTCAAACCCTTCCACATACTCTATCCTGGAAGCAGAGGCATCTCAAGAATCGTCATCCTACTCTATGTAA___ACTTTAGACCTGTTCGTAAGTCTCACCTATATATACATATGCATATGTGCAAGCAATTTCTCATGCAAGCAACCTTACTTTCTGGGAAATTACAATAAATATAGGTGACTTTGGTTTGTTGAAATTAATTTTCCTTGTGTGCATTGACTAATCTACGAAGTCTTTGGATCCTCATTGACCTGTGAATGACTCGAGGTGCCATATAACTTTTGTAATTAAACGATAATTTCAAAATTAATTGTTATGATTATTAAAAGTTTATGCGAGCATAATCATATTAATAAAGATGGGTGTCATATTAAC

Fln Alignment:

Contig17013___DRRRYYISKKEANMSPATVLLSIFVIVYGSAVKALPTPVAGLSWTFYNTSCPSLESIVRQRMEAYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNSTSGEQTVAPNLSLRAEALKIINDIKENVEAACSGTVSCADILALAARDSVDIAGGPCYPIPLGRRDSLTFANSTTVLANLPGPTSNVTHLISIFGPKGLNNTDLVALSGGHTIGRGNCSSFDNRLYNSTTGSQMQDPTMDQTFAKNLYLTCPTSTTVNTTKLDIRTPNLFDNKYYVNLLNRQTLFTSDQSLYSDSRTRQIVINFAVNQTLFFEEFVLGMLKMGQLDVLTGSEGEIRNNCWASNPS
Q9FYS6_______________DRRMYYISKKKAIMTPATVFVSIFVIVYGSAVNALPTPVAGLSWTFYNTTCPSVESIVWQRMEVYLSADITQAAGLLRLHFHDCFVQGCDGSVLLNSTSGEQTAAPNLSLRAQALKIINDIKQNVEAACSGIVSCADIVALAARDSVAIAGGPFYPLPLGRRDSLTFANQSTVLANLPGPTSNVTELISFFDPKGLNLTDLVALSGGHTIGRGNCSSFDNRLYNSTTGAQMQDATLDQSFAKNLYLTCPTSTTVNTTNLDILTPNLFDNKYYVNLLNKKTLFTSDQSFYTDTRTQNIVINFEANQSLFFHQFLLSMLKMGQLDVLTGSQGEIRNNCWASNPS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
540			25	75	0.996473
1424		80		20	0.995493
1425		80	20		0.995493
1426	20	80			0.995493
1427	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain