SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17007

Length: 1985 nt

UniGene Fasta

>sp_v3.0_unigene17007
TAAGTCGGATAAAAAAGATCAATTTGAAGTCACATGGGAAGCAATTATATCAATATTTTAGAATGTTAGAAGGGGATTCGAGACACAATATATGAAGTAGATAAATAGGTATCCACAGAAAGATAGGAGAAAACCGGAAGCTCTCAGCCATGGCTGCCGTTGGAGTTTCAGGAGCATTTACATGTGAGAACTTAGTCACCAGAAAATCTGATTTATCATCATCATTATCATCTTGCGCAAGTCAATGGAGAGGTGGGTCTGTTCAAGTTTTCGGAAGGGGATTGACGCCTTCAAAATTCTGCAATAAGAAGAAGCGCGGGAAGATTCCTGGAGCCAAGGCCAGCCTTGATCACATTCCGAAGCAGTTCAGACAGGAGAATCTCAAAGAAGGGTTGATGGAGAATTTCAAAAATATTCCTGAATCTATTTATGGTCTCAATCCTTCACAAATGGATATGTTCCTTACAGAAGACAGCCCGATTAAGCGGCAAGCTGACCGAGTTACTGAGGAATCAATAACATCTGCAAAACACTATAGCGAGGGTACTGGTATGTGGAGTTTGACAGGCTTGAAGGATGGGCCATCTAGACTTAGTATGAGTGTGAATATGTACCGAGGTGGGGGAGGATATGGAAGGCTCAGGTCTGCTCCACCTGATTTACCTTCTCTGCTTTTGGATGCTCGAATATTGTACCTAGGCATGCCTATTGTCCCTGCAGTAACAGAACTCCTTATTGCTGAACTTATGTGGTTGGACTATGATAATCCTTCAAAGCCAGTTTATTTTTATATAAACTCACCGGGAACACAGAATGAAAAGCATGAGCCCATTGCATTCGAGACAGAGGCATATGCTATTGCAGATATGATGGCGTATGTGAGGCCCAAGGTTTATACACTGAACTGTGGAATGGCCTTTGGCCAGGCAGCAATGCTTCTGTCACTTGGAACCAAGGGTAGTCGTACTCTTATGCCTAGCTCAACAACAAAACTGCACCTGCCAGTAGTGAATAAATCCAGTGGTTCTTCCGTTGATATGTGGATCAAGGCAAAAGAGTTGGAAGTAAATACACAGTATTACATTGAATTACTGGCAAAAGGAATTGGCAAAACGGAAGAAGAGATTGCAAAGGATATTCAAAGATCAAGATACTTTTTTCCACAGGAAGCAATCGATTATGGTATTGCTGATAAGATCCTTACAAAACAGGGTTTGTCCGTGGAGAAAAGGAACTATGATGAGATGCTTGCTCAGTCAAAAGCCGCACGGCTGAAATCTGGCGGGGCTGGAGCACTGGCTTCTCCAGCAGGCAGGCCCTAGGTATAGATCATTGATGAGTCATCTTTTTCCGGTTAAGATGAGCTGCACAGAGACTGCTACAGCTATTATGTTGGCAGGATATGTATAACCTGAAAGATGTATCTTAATATAACCCTGAACAATCTATGTTATTTGCTAGCACACATACAGTGTTTTGTATATTGTCAGAATCACAATGATCTTCTCGACATGTAAACAAATATTCAAGGCAATAGGATTGAATATCTATTATGAAAGCAAGCACTACAAAAATACATATTGTGTATTTATGTCATCTTCTTTTCACAGGTACAATGCTTCATATATTTCATATGAAGAATATATGTGTACTGTCAACATCCATCATATCACTTGCAGGAATTAAACCTGGGTGGGGAGGACTTCATTTCTTCCTCGCAACCACCCAGGATAACCCGAATCGATCTATTTATGTTATCTTTGCTACTCTGTGACCTGTTGATTATATTGACAGATTTTGCTTAATTACATAACCTGTCTGTGATTATTTTGAATTTTTGCCTAAAATATTTGAAGCCCAACATTTTGGGTGAACACTTCATCTGTCATCAAAGAAATCCAACATTTTGGGTGAACACTTCATCCGTCATCAAAGAAATCCAACATTTTGGGTGAACACTTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene17007

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=2 Tax=Picea sitchensis RepID=B8LL17_PICSI	-	-	82%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	ATP-dependent Clp protease proteolytic subunit	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S14, ClpP	IPR001907	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G49970.1	CLPR1, NCLPP5, SVR2 CLP protease proteolytic subunit 1 chr1:18501936-18504462 REVERSE LENGTH=387	63%
RefSeq	Arabidopsis thaliana	NP_564560.1	ATP-dependent Clp protease proteolytic subunit-related protein 1 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002313173.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL17

Fln msg:

Fln protein: MAAVGVSGAFTCENLVTRKSDLSSSLSSCASQWRGGSVQVFGRGLTPSKFCNKKKRGKIPGAKASLDHIPKQFRQENLKEGLMENFKNIPESIYGLNPSQMDMFLTEDSPIKRQADRVTEESITSAKHYSEGTGMWSLTGLKDGPSRLSMSVNMYRGGGGYGRLRSAPPDLPSLLLDARILYLGMPIVPAVTELLIAELMWLDYDNPSKPVYFYINSPGTQNEKHEPIAFETEAYAIADMMAYVRPKVYTLNCGMAFGQAAMLLSLGTKGSRTLMPSSTTKLHLPVVNKSSGSSVDMWIKAKELEVNTQYYIELLAKGIGKTEEEIAKDIQRSRYFFPQEAIDYGIADKILTKQGLSVEKRNYDEMLAQSKAARLKSGGAGALASPAGRP*

Protein Length: 392

Fln nts: TAAGTCGGATAAAAAAGATCAATTTGAAGTCACATGGGAAGCAATTATATCAATATTTTAGAATGTTAGAAGGGGATTCGAGACACAATATATGAAGTAGATAAATAGGTATCCACAGAAAGATAGGAGAAAACCGGAAGCTCTCAGCC_-_ATGGCTGCCGTTGGAGTTTCAGGAGCATTTACATGTGAGAACTTAGTCACCAGAAAATCTGATTTATCATCATCATTATCATCTTGCGCAAGTCAATGGAGAGGTGGGTCTGTTCAAGTTTTCGGAAGGGGATTGACGCCTTCAAAATTCTGCAATAAGAAGAAGCGCGGGAAGATTCCTGGAGCCAAGGCCAGCCTTGATCACATTCCGAAGCAGTTCAGACAGGAGAATCTCAAAGAAGGGTTGATGGAGAATTTCAAAAATATTCCTGAATCTATTTATGGTCTCAATCCTTCACAAATGGATATGTTCCTTACAGAAGACAGCCCGATTAAGCGGCAAGCTGACCGAGTTACTGAGGAATCAATAACATCTGCAAAACACTATAGCGAGGGTACTGGTATGTGGAGTTTGACAGGCTTGAAGGATGGGCCATCTAGACTTAGTATGAGTGTGAATATGTACCGAGGTGGGGGAGGATATGGAAGGCTCAGGTCTGCTCCACCTGATTTACCTTCTCTGCTTTTGGATGCTCGAATATTGTACCTAGGCATGCCTATTGTCCCTGCAGTAACAGAACTCCTTATTGCTGAACTTATGTGGTTGGACTATGATAATCCTTCAAAGCCAGTTTATTTTTATATAAACTCACCGGGAACACAGAATGAAAAGCATGAGCCCATTGCATTCGAGACAGAGGCATATGCTATTGCAGATATGATGGCGTATGTGAGGCCCAAGGTTTATACACTGAACTGTGGAATGGCCTTTGGCCAGGCAGCAATGCTTCTGTCACTTGGAACCAAGGGTAGTCGTACTCTTATGCCTAGCTCAACAACAAAACTGCACCTGCCAGTAGTGAATAAATCCAGTGGTTCTTCCGTTGATATGTGGATCAAGGCAAAAGAGTTGGAAGTAAATACACAGTATTACATTGAATTACTGGCAAAAGGAATTGGCAAAACGGAAGAAGAGATTGCAAAGGATATTCAAAGATCAAGATACTTTTTTCCACAGGAAGCAATCGATTATGGTATTGCTGATAAGATCCTTACAAAACAGGGTTTGTCCGTGGAGAAAAGGAACTATGATGAGATGCTTGCTCAGTCAAAAGCCGCACGGCTGAAATCTGGCGGGGCTGGAGCACTGGCTTCTCCAGCAGGCAGGCCCTAG___GTATAGATCATTGATGAGTCATCTTTTTCCGGTTAAGATGAGCTGCACAGAGACTGCTACAGCTATTATGTTGGCAGGATATGTATAACCTGAAAGATGTATCTTAATATAACCCTGAACAATCTATGTTATTTGCTAGCACACATACAGTGTTTTGTATATTGTCAGAATCACAATGATCTTCTCGACATGTAAACAAATATTCAAGGCAATAGGATTGAATATCTATTATGAAAGCAAGCACTACAAAAATACATATTGTGTATTTATGTCATCTTCTTTTCACAGGTACAATGCTTCATATATTTCATATGAAGAATATATGTGTACTGTCAACATCCATCATATCACTTGCAGGAATTAAACCTGGGTGGGGAGGACTTCATTTCTTCCTCGCAACCACCCAGGATAACCCGAATCGATCTATTTATGTTATCTTTGCTACTCTGTGACCTGTTGATTATATTGACAGATTTTGCTTAATTACATAACCTGTCTGTGATTATTTTGAATTTTTGCCTAAAATATTTGAAGCCCAACATTTTGGGTGAACACTTCATCTGTCATCAAAGAAATCCAACATTTTGGGTGAACACTTCATCCGTCATCAAAGAAATCCAACATTTTGGGTGAACACTTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig17007___MAAVGVSGAFTCENLVTRKXXXXXXXXXCASQWRGGSVQVFGRGLTPSKFCNKKKRGKIPGAKASLDHIPKQFRQENLKEGLMENFKNIPESIYGLNPSQMDMFLTEDSPIKRQADRVTEESITSAKHYSEGTGMWSLTGLKDGPSRLSMSVNMXXXXXXXXXXXXXXXXXXXXXXXXX---ILYLGMPIVPAVTELLIAELMWLDYDNPSKPVYFYINSPGTQNEKHEPIAFETEAYAIADMMAYVRPKVYTLNCGMAFGQAAMLLSLGTKGSRTLMPSSTTKLHLPVVNKSSGSSVDMWIKAKELEVNTQYYIELLAKGIGKTEEEIAKDIQRSRYFFPQEAIDYGIADKILTKQGLSVEKRNYDEMLAQS
B8LL17_______________MATLGVSGGFTCENLVTRKSDLSSSLSSCASQWRGGSVQVFGRGLMSSKFCNKKKRGKLTGAKASFDHIPKQFRQENLKEGLMENFQNIPESLYGLNPSQMDMFLTEDSPIKRQAERVTEESITSAKHYREGTGMWSLTGLNDGPSRLSMSANMYRGGGGGGGYGRLRSAPPDLPSLLLDARILYLGMPIVPAVTELLIAELMWLDYDNPSKPIYFYINSPGTQNEKHEPIAFETEAYAIADMIAYVKPKVYTLNCGMAFGQAGMLLSLGTKGHRALMPSSTTKLHLPVVNKSSGSSIDMWIKAKELEANTEYYIELLAKGIGKTKEEIAKDIQRSRYFFPQEAIDYGIADKILPKQGLVMEKRNYDEMLAQS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1077			93	6	0.99903
1107		7		92	0.999532
1108	7	3	89		0.998606
1109	3		89	7	0.998606
1110		89		10	1.0
1523	94		1		0.951749
1544	95	4			0.995055
1575	85			4	0.999726
1595		18		81	1.0
1635	84	15			0.999986
1686	50		50		1.0
1711		28		71	1.0
1743		50		50	1.0
1754			33	66	0.997452
1763		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain