SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16993

Length: 994 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene16993 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain, chloroplastic n=1 Tax=Pinus thunbergii RepID=RBS_PINTH	-	-	98%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	98%
Sma3	Ribulose bisphosphate carboxylase small chain	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-bisphosphate carboxylase.	EC:4.1.1.39	-	6.469e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630	6.469e-27	%
Sma3	Carbon fixation in photosynthetic organisms	00710	6.469e-27	%
Sma3	Metabolic pathways	01100	6.469e-27	%

Source	Gene names
Sma3	ATS1A; ATS1B; ATS2B; ATS3B; At1g67090; At5g38410; At5g38420; At5g38430; GSVIVT00017679001; LOC_Os12g19394; LOC_Os12g19470; MXI10.14; MXI10.15; Os12g0291100; Os12g0291400; Os12g0292400; OsI_018348; OsI_38042; OsI_38046; OsJ_17688; OsJ_35811; OsJ_35814; OsJ

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast ribulose bisphosphate carboxylase complex	GO:0009573	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	thylakoid lumen	GO:0031977	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	-
Sma3	photorespiration	GO:0009853	Biological Process	-
Sma3	carbon fixation	GO:0015977	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67090.1	RBCS1A ribulose bisphosphate carboxylase small chain 1A chr1:25048465-25049249 REVERSE LENGTH=180	65%
RefSeq	Arabidopsis thaliana	NP_176880.1	ribulose bisphosphate carboxylase small chain 1A [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002329284.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
397	1		98		0.982306
617	1	70			1.0
621	8		8	83	1.0
623		2	9	88	1.0
624		4		92	0.98868
625	5	94			0.998397
633	93		4		0.98137
636	95			4	0.996252
637		95	4		0.996252
736		96		3	0.983282
738		95		4	0.999991
759		2		94	0.967557
776	4		92	2	0.98868
852	11			88	0.923564
958			94	5	0.998397
979	8			92	0.999718

SSRs (tot: 1)

Start position	End position	Sequence	Length
856	874	GCTCCC GCTCCC GCTCCC G	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain