SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16974

Length: 1244 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16974

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Carbonic anhydrase n=3 Tax=Picea sitchensis RepID=A9NSY6_PICSI	-	-	77%
FL-Next	sp=Carbonic anhydrase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbonic anhydrase	IPR001765	-	0.0	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G70410.2	-	60%
RefSeq	Arabidopsis thaliana	NP_849872.1	beta carbonic anhydrase 4 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002314617.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0C5

Fln msg:

Fln protein: MDSSIVARFGRTGFYGSEIRQQSEISRSFNTVQISRQAPNRICAPTKRTGAITNQAVAEEQIVVDPIQRVKSGFKNFKTELYDKEKELISKLSKGQSPKFMVVACADSRVCPTHVLKFNLGEAFVVRNVANMVPPYEQSGFPGVSSAVEYAVLHLKVENILVIGHSCCGGINALMSLPDDGPKQTAFIEDWIKIGKEAKLRVKKLYGNLPFDQQLVLCEKEAVNVSLENLLTFPFVREGVLNGTLALHGGYYNFVDGTFDRWSFNLSLTPAETLA*

Protein Length: 277

Fln nts: TACATGGGGACTCCACCTTGATATCACCATTGGACTCTTCATTTGCTTTCACCCAGGGCCCAGGGGAAGCCTGAGATCACACT_-_ATGGATTCAAGCATAGTAGCAAGGTTCGGACGTACCGGATTTTACGGTTCGGAAATTCGTCAACAGTCTGAGATATCACGAAGCTTCAATACAGTACAGATAAGCAGGCAAGCCCCGAATCGAATCTGTGCGCCTACCAAGAGGACTGGGGCAATCACCAATCAGGCAGTTGCAGAAGAGCAGATTGTAGTTGATCCAATCCAGAGGGTCAAAAGTGGATTCAAAAACTTCAAAACCGAGCTTTACGATAAGGAGAAAGAATTGATCTCCAAATTGTCCAAGGGTCAATCTCCCAAGTTCATGGTGGTTGCCTGCGCGGACTCGCGAGTATGCCCGACCCATGTTCTCAAATTCAATCTGGGGGAAGCATTCGTCGTGCGCAACGTCGCCAACATGGTTCCTCCCTACGAGCAGAGTGGTTTTCCAGGAGTGAGTTCTGCTGTGGAGTATGCTGTTTTGCATCTCAAGGTGGAGAATATACTGGTGATAGGCCATAGCTGCTGTGGAGGAATCAACGCGCTTATGTCACTACCAGACGATGGCCCCAAACAAACGGCTTTCATAGAAGATTGGATAAAGATCGGAAAAGAAGCAAAGCTCAGGGTTAAGAAATTGTATGGAAACTTGCCATTTGACCAGCAGCTTGTTCTGTGTGAAAAGGAAGCTGTGAACGTGTCACTGGAGAATCTCCTCACATTTCCATTCGTCAGAGAGGGAGTGTTAAATGGTACTTTGGCTTTACATGGTGGATATTATAATTTTGTAGATGGAACGTTTGATAGGTGGTCCTTCAATCTTTCCCTCACACCAGCAGAGACTCTTGCATGA___GGGGCCATAACCCTGTGTATTATTTGCTCTACTGGCTTTTCTTTGTTTTTTAGTGACCAGTCAAGAAGTTAATGGCATGGTTGAGGTTGAGTTTGTTTTTAAACAATACTATTTCATTGAGCTTTTTCTCTGCTCAATGATCTTTGTTTTTAGTAACCAGTCAAGAAACTAATGTCATTGCTAATGTTGAGTATGTTTTTAAACATTGCTCCTTCATTGAGCTCTTTTTTGGGTTAAGTTTGTTTTTAAACACTGTTCTTTTATAGAGCTTTTCTATGCTCTCACTTAGAGTTTTAAGCTCTTTCTATTAATTATTTTGTGGAATTAATTACT

Fln Alignment:

Contig16974___MDSSIVARFGRTGFYGSEIRQQSEISRSFNTVQISRQAPNRICAPTKRTGAITNQAVAEEQIVVDPIQRVKSGFKNFKTELYDKEKELISKLSKGQSPKFMVVACADSRVCPTHVLKFNLGEAFVVRNVANMVPPYEQSGFPGVSSAVEYAVLHLKVENILVIGHSCCGGINALMSLPDDGPKQTAFIEDWIKIGKEAKLRVKKLYGNLPFDQQLVLCEKEAVNVSLENLLTFPFVREGVLNGTLALHGGYYNFVDGTFDRWSFNLSLTPA
A9P0C5_______________MESSTVARIGRSGFYGTEIRHQYEMPRRISSTVPIRQAPNHLSTAAKRVQTITS----ELQVAVDAIERVKNGFKNFKSEVYEKEKELISKLSKGQSPKFMVVACADSRVCPTHILNFNLGEAFVIRNVANMVAPYEKSGYPGVGSAVEYAVLHLKVENIMVIGHSCCGGINALMSFPDDGPKQTAFIEDWIKIGQEAKFRVKKLHADLPFDQQVTLCEKEAVNVSLENLLTYPFVREGVLKGTLALQGGYYNFVDGTFDTWSFNDSLTPA

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
210	80			20	1.0
220		20		80	1.0
227	80		20		1.0
298	66		33		1.0
368		60		40	1.0
372		20		80	0.995493
494	80		20		0.995493
551	20		80		0.995493
1143			33	33	0.997753
1152	33			66	0.997452
1153		33		66	0.997452
1154	25		75		0.996473
1223	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain