SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16968

Length: 1789 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16968

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonoid 3',5'-hydroxylase n=2 Tax=Cyclamen RepID=D0EUZ8_9ERIC	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G07990.1	TT7, CYP75B1, D501 Cytochrome P450 superfamily protein chr5:2560437-2562859 FORWARD LENGTH=513	45%
RefSeq	Arabidopsis thaliana	NP_196416.1	Flavonoid 3'-monooxygenase [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002314003.1	cytochrome P450 flavonoid 3',5'-hydroxylase [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRW5

Fln msg:

Fln protein: MGTVGSEAIIDMEYLNLDEIVKWFLSWLALYIGFRYVLRSRLKLKKRQLPPGPPGWPLVGSPPLLGAMPHVTLYNMYKKYGPVVYLKLGTSDMVVASTPAAAKAFLKTLDINFSNRPGNAGATYIAYDSQDMVWAAYGGRWKMERKVCNMHMLGGKALEDWQPVRDAEMGFMLRNILSHSQRGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQRGMKKLHKKWDALIQRMIEEHQSTAKQRASKPDFLDIVMSQRDNCDGQGGRLSDVHIKALLLNLFTAGTDTSSSVIEWTLAEVINNPRLLKRVHQEMDAVIGRERRLKESDLANLPYFVAVCKEGFRKHPSTPLSLPRVSTEACEVDGYYIPKNTRLMVNIWGIGRDPEVWEKPEEFNPDRFVGSKIDPRGNDFELIPFGAGRRICAGTRMGITMVEYNLGSLIHAFDWDVPPNQDGLNMDEAFGLALQKAVPLVAKATPRLPLHLY*

Protein Length: 521

Fln nts: _-_ATGGGGACAGTGGGCTCAGAGGCAATAATAGATATGGAGTACTTGAATTTGGACGAAATTGTAAAATGGTTTCTCTCTTGGCTTGCTCTCTACATCGGATTTCGTTATGTTTTGAGATCGAGGTTGAAGCTCAAGAAGAGGCAGCTCCCACCCGGGCCACCCGGATGGCCGTTGGTGGGGAGTCCGCCATTGCTGGGAGCGATGCCTCACGTTACCCTCTACAACATGTATAAGAAATACGGCCCCGTTGTCTATCTCAAACTGGGAACGTCTGACATGGTCGTGGCCTCGACGCCCGCTGCGGCTAAGGCGTTTCTGAAGACTTTGGATATAAATTTCTCCAACCGGCCAGGCAATGCGGGCGCCACGTACATTGCCTACGATTCTCAGGACATGGTGTGGGCAGCATACGGAGGACGATGGAAGATGGAACGCAAGGTGTGCAACATGCACATGTTGGGAGGGAAGGCGTTGGAAGATTGGCAGCCGGTGAGGGACGCAGAGATGGGCTTCATGCTCCGGAATATTCTCAGTCACTCGCAGCGCGGAGAGACGGTGAATGTGCCGGACCTCCTGAACATCTGCGCCGCCAACATGATCGGGCAGATCATTCTTAGCAAGCGGGTGTTCGAGACAGAAGGGGACGAGGCCAACGAGTTCAAGGACATGGTGGTGGAACTCATGACCTCCGCTGGATACTTCAATATCGGAGACTTCATTCCATCGCTAGCGTGGATGGACTTGCAGGGCATTCAACGGGGTATGAAGAAGCTCCACAAGAAATGGGACGCACTCATACAGCGGATGATCGAGGAACACCAGTCCACGGCCAAGCAACGAGCGTCTAAGCCCGATTTCCTAGACATTGTGATGTCTCAGAGAGACAACTGCGACGGCCAAGGCGGAAGGCTCTCCGATGTTCATATCAAAGCTCTACTACTGAATTTATTCACAGCAGGAACCGATACGTCCAGCAGCGTGATCGAATGGACATTGGCGGAGGTAATCAACAACCCCAGGTTACTGAAGCGGGTGCATCAGGAGATGGACGCGGTGATCGGGCGTGAGAGGAGACTGAAGGAGTCGGACCTTGCGAACCTGCCCTACTTTGTGGCCGTCTGCAAAGAGGGATTTCGGAAGCACCCGTCCACACCGCTCAGCCTCCCGCGCGTCTCCACCGAAGCGTGCGAGGTTGACGGTTACTACATTCCCAAGAACACTCGGCTAATGGTGAACATCTGGGGAATCGGGAGAGATCCGGAGGTGTGGGAGAAGCCAGAGGAGTTCAATCCAGACAGGTTTGTGGGTTCCAAGATCGATCCTCGGGGCAACGACTTCGAGCTCATCCCGTTTGGCGCAGGCAGGCGCATCTGTGCGGGCACTCGTATGGGGATTACGATGGTGGAGTACAATTTGGGTTCCTTAATCCATGCTTTTGATTGGGATGTGCCACCAAACCAAGACGGTCTGAACATGGACGAAGCATTCGGCCTGGCCCTGCAGAAGGCCGTGCCTCTGGTGGCCAAGGCGACTCCTCGCCTTCCTCTCCATCTCTACTAA___TCACGCACGCAGCCGTACTTGAGTGTATTGGAGTAAAAGTTGTGAGTCATAAAAATAAAGTGTCGTCTAGGAGGCAAAGTTCATGCACATCGTCGAGTGTGTCAGTGTATCTGTTCAATATATATTTAACAAATATATCGATACATTCCGGTCCTTCCATACATATTTACATCGATGTACAGATTGTGCATTTATTTTCAAAATAGATGAATAGCTGATTTATAACATT

Fln Alignment:

Contig16968___MEYLNLDEIVKWFLSWLALYIGFRYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMPHVTLYNMYKKYGPVVYLKLGTSDMVVASTPAAAKAFLKTLDINFSNRPGNAGATYIAYDSQDMVWAAYGGRWKMERKVCNMHMLGGKALEDWQPVRDAEMGFMLRNILSHSQRGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQRGMKKLHKKWDALIQRMIEEHQSTAKQRASKPDFLDIVMSQRDNCDGQGGRLSDVHIKALLLNLFTAGTDTSSSVIEWTLAEVINNPRLLKRVHQEMDAVIGRERRLKESDLANLPYFVAVCKEGFRKHPSTPLSLPRVSTEACEVDGYYIPKNTRLMVNIWGIGRDPEVWEKPEEFNPDRFVGSKIDPRGNDFELIPFGAGRRICAGTRMGITMVEYNLGSLIHAFDWDVPPNQDGLNMDEAFGLALQKAVPLVAKATPRLPLHLY
C0PRW5_______________MDSLNLHEFMLWVLSWLALYLGFRYVLRSSLKLKKRHLPPGPSGWPLLGSLPLLGAMPHVTLYNMYKKYGPIVYLKLGTSDMVVASTPAAAKAFLKTLDINFSNRPGNAGATYIAYDSQDMVWAAYGGRWKMERKVCNLHMLGGKALEDWQPVRDAEMGFMLQNILKHSQRGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQRGMKKLHKRWDALIARMIEEHQSTAKQRASRPDFLDIVMSQRDNCDGQGGRLSDVHIKALLLNLFTAGTDTSSSVIEWTLAELINNPKLLKRVQHEMDTVIGRERRLKESDLANLPYFVAVCKEGFRKHPSTPLSLPRVSTEACEVNGHYIPKNTRLMVNIWGIGRDPEVWEKPEEFNPERFVGSKIDPRGNDFELIPFGAGRRICAGTRMGITMVEYNLGSLIHAFNWDLPPNQDGLNMDEAFGLALQKAVPLVAMASPRLPLHLY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1582	97		2		0.936149
1591		2	97		0.951554
1715			20	80	0.999996
1765	80	20			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain