SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16958

Length: 1980 nt

UniGene Fasta

>sp_v3.0_unigene16958
CGTCGTGACCTTGGCTGTCATGGGGGCCATAGATCGATATCCGAGCTCCTGCATACCTTCTAACGGAGGGCTATTCTTCGTCCGCGTTGTGTCTGAGACCCAGAAAGAAAAAAAGGTGAGGTTTTGAAACAGATTTCGCCCCCCGTTTGTTCTTCTAAGATTTCTCTGGATAAGCTGGATTTTTTGAGGGTTTGTGTGGTATTGGCGAGAATAGATTGAGAATAAACAAATCCAAGAGATCGTTCGAGGGTTTTCTGGGGGCTTATAGTGGAACTGTTGAAACGTTTGACGGGTTCTCTACGAAAATTGTCTAGGGAGATATACAGGGTTTTCTGGGTTTCGAGGGATTAGCCGGGTTTTGAGGTGTTTGCACATGATTTGTTGGTGGGAGACGGAGAACATTGCTTTGTTAAATTGGTCAGCGGGTTTGCAGCTGAATCCGAGGCTGTTGCATCCTTAAAAGTGTTTTACCTTTGTGGTTTGGACCTTAGGGTTTGAACTCTTTAAAGAAACTCTCAAAATCAGCCTTAAACAATAACATACAAGATGTCCATTCTACCCCAAAGTGATTCCCTCATAATAAGGGAAGTTTGGGCAGATAATCTGGAGGAGGAGTTTGCTCTGATTCGGGAAATTGTGGACGATTACCCTTATATTGCCATGGATACTGAGTTTCCTGGTATAGTGGTAAGACCTGTGGGCAATTTTAAGACTGCTTCAGAGTTCCACTATTACACTCTAAAGTCTAATGTTGATATACTTAACCTTATTCAATTGGGTCTCACTTTCTCAGACGAGGATGGGAACCTGCCTCGCTGCGGTACAGATAAGTACTGCATATGGCAATTCAATTTCCGGGAATTCAATCTTGATAAAGATATGTATGCCATTGATTCTATTGAGCTTCTGCAACAGAGTGGTATTGATTTCAAGAAGAACAATGAGAATGGAATTGATGCACAAGTATTCGGTGAGCTGCTAATGTCATCCGGCATTGTTTTGAATGACACTGTGCACTGGGTCACCTTCCATAGTGGCTATGATTTCGGGTACATGCTGAAGCTTCTAACGTGCCAGCAGTTGCCTCCAACACCTGCAGGCTTCTTCAGCTTGATTAACATGTATTTTCCCACAGTGTATGATATCAAGCACTTGATGAAGTTTTGCAACAGTCTGCACGGTGGATTGAACAAGCTGGCTGAATTATTGGATGTGAAGAGAATTGGCGTGTGCCATCAAGCTGGTTCGGATAGCCTGTTAACATCCTGTGCATTTAGGAAATTGAGAGAGGGGTTTTTCAATGGCTCCACTGAGAAATATGCAGGTGTGTTATATGGTTTAGCTTTTGACAATGGCCAGAGTGTTCATTGAGGTTTTGAGATCAGAGAGAAATGTCATAGACTCTCATCTCTTTGTACACTTTTTTGGGCAAATCTGCCGCTTAACTTATTAATATAAGGTGGGTTAAATAATTATTATGAACATGGCTTCCATATTTGTCATTGCCATTGAGTGTGATATGCTCTATCTATGTGTTTATGTGTCTGTGTTTCATTCTGCAGTTTCGTGATTTATATCCTTGCATAAACACGAATTCTAATTCAATGAAGTCTGTGCAGTGCTGTATATCTTGAACATTTTTTTAGATGGTAGCTAATCCTTTTTATTGAATGGAGAAATTGCAAAACTCTTATATGAGTATGCATTACATTACATTGAATGAAATGAAATGAAATTCATGTTGATGCCTATGAATGACCAAAATAGGTAAATGGTAATTGAATGAATGGTGATTAACAACAAGAGTGTCTGAAGCACCTTCAAAAACAAGTGATCAAAATTCAACACCAAGATTATAGTCTAGATAGTGTAGTAGGTAATCCTGCAGCCAGAGGAATTGATTGAGTTATTGAATTGAAAGAATTGAGTTGTATTATACAGCTCAGGTGAACGAGATGCATCACATCTGCATTTGTAAAC

Ace file of the UniGene sp_v3.0_unigene16958

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative CCR4-associated factor 1-7 [Arabidopsis thaliana] sp\|Q9SKZ2.2\|CAF1G_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 7 gb\|AAK93623.1\| putative CCR4-associated factor [Arabidopsis thaliana] gb\|AAD15397.2\| putative CCR4-associated fact	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease CAF1	IPR006941	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32070.1	Polynucleotidyl transferase, ribonuclease H-like superfamily protein chr2:13640829-13641656 REVERSE LENGTH=275	76%
RefSeq	Arabidopsis thaliana	NP_565735.1	putative CCR4-associated factor 1-7 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002299263.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUT9

Fln msg:

Fln protein: MSILPQSDSLIIREVWADNLEEEFALIREIVDDYPYIAMDTEFPGIVVRPVGNFKTASEFHYYTLKSNVDILNLIQLGLTFSDEDGNLPRCGTDKYCIWQFNFREFNLDKDMYAIDSIELLQQSGIDFKKNNENGIDAQVFGELLMSSGIVLNDTVHWVTFHSGYDFGYMLKLLTCQQLPPTPAGFFSLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVKRIGVCHQAGSDSLLTSCAFRKLREGFFNGSTEKYAGVLYGLAFDNGQSVH*

Protein Length: 276

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGGCCATAGATCGATATCCGAGCTCCTGCATACCTTCTAACGGAGGGCTATTCTTCGTCCGCGTTGTGTCTGAGACCCAGAAAGAAAAAAAGGTGAGGTTTTGAAACAGATTTCGCCCCCCGTTTGTTCTTCTAAGATTTCTCTGGATAAGCTGGATTTTTTGAGGGTTTGTGTGGTATTGGCGAGAATAGATTGAGAATAAACAAATCCAAGAGATCGTTCGAGGGTTTTCTGGGGGCTTATAGTGGAACTGTTGAAACGTTTGACGGGTTCTCTACGAAAATTGTCTAGGGAGATATACAGGGTTTTCTGGGTTTCGAGGGATTAGCCGGGTTTTGAGGTGTTTGCACATGATTTGTTGGTGGGAGACGGAGAACATTGCTTTGTTAAATTGGTCAGCGGGTTTGCAGCTGAATCCGAGGCTGTTGCATCCTTAAAAGTGTTTTACCTTTGTGGTTTGGACCTTAGGGTTTGAACTCTTTAAAGAAACTCTCAAAATCAGCCTTAAACAATAACATACAAG_-_ATGTCCATTCTACCCCAAAGTGATTCCCTCATAATAAGGGAAGTTTGGGCAGATAATCTGGAGGAGGAGTTTGCTCTGATTCGGGAAATTGTGGACGATTACCCTTATATTGCCATGGATACTGAGTTTCCTGGTATAGTGGTAAGACCTGTGGGCAATTTTAAGACTGCTTCAGAGTTCCACTATTACACTCTAAAGTCTAATGTTGATATACTTAACCTTATTCAATTGGGTCTCACTTTCTCAGACGAGGATGGGAACCTGCCTCGCTGCGGTACAGATAAGTACTGCATATGGCAATTCAATTTCCGGGAATTCAATCTTGATAAAGATATGTATGCCATTGATTCTATTGAGCTTCTGCAACAGAGTGGTATTGATTTCAAGAAGAACAATGAGAATGGAATTGATGCACAAGTATTCGGTGAGCTGCTAATGTCATCCGGCATTGTTTTGAATGACACTGTGCACTGGGTCACCTTCCATAGTGGCTATGATTTCGGGTACATGCTGAAGCTTCTAACGTGCCAGCAGTTGCCTCCAACACCTGCAGGCTTCTTCAGCTTGATTAACATGTATTTTCCCACAGTGTATGATATCAAGCACTTGATGAAGTTTTGCAACAGTCTGCACGGTGGATTGAACAAGCTGGCTGAATTATTGGATGTGAAGAGAATTGGCGTGTGCCATCAAGCTGGTTCGGATAGCCTGTTAACATCCTGTGCATTTAGGAAATTGAGAGAGGGGTTTTTCAATGGCTCCACTGAGAAATATGCAGGTGTGTTATATGGTTTAGCTTTTGACAATGGCCAGAGTGTTCATTGA___GGTTTTGAGATCAGAGAGAAATGTCATAGACTCTCATCTCTTTGTACACTTTTTTGGGCAAATCTGCCGCTTAACTTATTAATATAAGGTGGGTTAAATAATTATTATGAACATGGCTTCCATATTTGTCATTGCCATTGAGTGTGATATGCTCTATCTATGTGTTTATGTGTCTGTGTTTCATTCTGCAGTTTCGTGATTTATATCCTTGCATAAACACGAATTCTAATTCAATGAAGTCTGTGCAGTGCTGTATATCTTGAACATTTTTTTAGATGGTAGCTAATCCTTTTTATTGAATGGAGAAATTGCAAAACTCTTATATGAGTATGCATTACATTACATTGAATGAAATGAAATGAAATTCATGTTGATGCCTATGAATGACCAAAATAGGTAAATGGTAATTGAATGAATGGTGATTAACAACAAGAGTGTCTGAAGCACCTTCAAAAACAAGTGATCAAAATTCAACACCAAGATTATAGTCTAGATAGTGTAGTAGGTAATCCTGCAGCCAGAGGAATTGATTGAGTTATTGAATTGAAAGAATTGAGTTGTATTATACAGCTCAGGTGAACGAGATGCATCACATCTGCATTTGTAAAC

Fln Alignment:

Contig16958___MSILPQSDSLIIREVWADNLEEEFALIREIVDDYPYIAMDTEFPGIVVRPVGNFKTASEFHYYTLKSNVDILNLIQLGLTFSDEDGNLPRCGTDKYCIWQFNFREFNLDKDMYAIDSIELLQQSGIDFKKNNENGIDAQVFGELLMSSGIVLNDTVHWVTFHSGYDFGYMLKLLTCQQLPPTPAGFFSLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVKRIGVCHQAGSDSLLTSCAFRKLREGFFNGSTEKYAGVLYGLAFDNGQSVH
A9NUT9_______________MSILPQSDSLIIREVWADNLMEEFALIREIVDDYPYIAMDTEFPGIVVRPVGNFKTASEFHYYTLKSNVDILNLIQLGLTFSDEDGNLPRCGTDKYCIWQFNFREFNLDKDMYAIDSIELLQQSGIDFKKNNEDGIDAQVFGELLMSSGIVLNDTVHWVTFHSGYDFGYMLKLLTCQQLPPTPAGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVKRIGVCHQAGSDSLLTSCAFRKLREGFFNGSTEKYAGVLYGLAFDNGQSVH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1395		42		57	1.0
1479		25		75	1.0
1482	80		20		0.995493
1483		80	20		0.995493
1789	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1719	1736	AATGA AATGA AATGA AAT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain