SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16909

Length: 1622 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16909

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glyceraldehyde-phosphate dehydrogenase n=6 Tax=Pinaceae RepID=Q41019_PINSY	-	-	88%
FL-Next	tr=Glyceraldehyde-phosphate dehydrogenase; Pinus sylvestris (Scots pine).	-	-	96%
Sma3	Glyceraldehyde-phosphate dehydrogenase	-	-	-

Source	GOs	Term	Type	Identity
Sma3	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000173	-	0.0	-
Sma3	Glyceraldehyde-3-phosphate dehydrogenase, type I	IPR006424	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G12900.1	GAPA-2 glyceraldehyde 3-phosphate dehydrogenase A subunit 2 chr1:4392634-4394283 REVERSE LENGTH=399	80%
RefSeq	Arabidopsis thaliana	NP_172750.1	glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002321065.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q41019

Fln msg:

Fln protein: MASATLSMAAVANCSSTHASLQASGKGFSEYSGLKSSSGFPCLRKYNEDFVSVVAFQTNAVGSSGQKRGVVEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDPDVQVAGNDGISVNGKVIKVVSDRNPVNLPWKDYEIDLVIEGTGVFVDREGAGKHLQAGAKKVLITAPGKGDIPTYVCGVNEEKYNPAEEIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRESADKELNGILAVCDEPLVSIDFRCSDVSSTVDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANNWKS*

Protein Length: 412

Fln nts: GCTCATGGGATCCACCACCTCTTGTTCAGGCTCCACACTATTGTTATTTGACAAGCTGCTCACTCCCAATGAAATTGCTACTCTAGTTGGGTCTGCCATTGGCACAAACAGAGACTCACACTGAAAGAGAGGGAGT_-_ATGGCCTCAGCTACACTCTCCATGGCTGCTGTGGCCAACTGCAGCAGCACTCATGCATCTTTGCAGGCTTCAGGGAAGGGATTCTCCGAATACTCAGGTCTCAAGAGCTCCAGTGGCTTCCCTTGCCTAAGGAAATACAACGAGGACTTCGTTTCAGTAGTTGCATTCCAAACTAATGCGGTAGGATCATCTGGACAAAAAAGGGGTGTAGTGGAGGCAAAGATAAAAGTTGCAATCAATGGGTTTGGAAGGATTGGTCGCAATTTTCTGCGATGTTGGCACGGGCGAAAGGACTCCCCTTTGGATGTGGTTGTCATCAATGACACCGGAGGTGTTAAACAGGCCTCGCATTTGCTCAAATATGATTCTATTCTTGGAACCTTTGACCCAGATGTGCAGGTAGCAGGAAATGATGGTATTTCTGTAAATGGCAAGGTCATCAAAGTTGTATCAGATCGGAACCCTGTAAATCTGCCATGGAAGGACTATGAGATTGATTTGGTCATAGAAGGCACTGGCGTGTTTGTTGACAGGGAAGGTGCTGGTAAGCATCTCCAAGCTGGGGCAAAGAAGGTTTTGATCACAGCTCCTGGAAAGGGAGATATTCCTACATATGTTTGTGGTGTGAACGAAGAAAAATATAACCCTGCAGAAGAAATTATTAGCAATGCCTCCTGCACTACAAATTGCCTGGCTCCTTTCGTTAAAGTTCTGGACCAGAAATTCGGAATCATCAAGGGCACCATGACAACAACTCATTCATATACTGGTGATCAGAGACTTCTCGATGCTAGTCATAGAGATCTTAGGCGCGCCAGAGCTGCAGCCTTGAACATTGTCCCAACATCCACAGGAGCAGCAAAGGCAGTGGCACTAGTTCTCCCAAGTCTGAAAGGGAAACTGAATGGAATTGCTCTGAGAGTGCCAACACCCAATGTATCAGTTGTTGATTTGGTTGTTCAGGTGGAGAAGAAGACATTTGCAGAGGAGGTGAATGCAGCGTTCCGAGAAAGTGCAGATAAAGAGCTTAATGGCATCCTTGCAGTGTGTGATGAGCCTCTAGTGTCAATAGATTTCAGGTGTTCAGATGTCTCCTCAACTGTGGATTCATCACTCACAATGGTGATGGGAGATGATATGGTGAAAGTGGTTGCTTGGTATGACAATGAATGGGGTTATTCACAGAGGGTTGTTGATTTGGCTGACATCGTTGCCAACAATTGGAAGTCTTAG___ACAATTAATTTCCCCTTGCTCAACCTAAGTTGCTACATAACAAATATGGTTGTTTTTGTTTTCCATTATTATTTGCTATGAAATGAGCCACTTAGTCTAATCTATGTAATGTATGTTTTATGTTGTTTATTTCATGACAACGTTATGAACAGTTTTTCAAATTAAAGTTGCAAGGTGCTTCGCGGAATTCTTTTTCCCCTCTATTGGTAAAGGATGCCTTATTCAACTTACTTACATCATAGTTTCAAGCTAC

Fln Alignment:

Contig16909___MASATLSMAAVANCSSTHASLQASGKGFSEYSGLKSSSGFPCLRKYNEDF-VSVVAFQTNAVGSSGQKRGVVEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDPDVQVAGNDGISVNGKVIKVVSDRNPVNLPWKDYEIDLVIEGTGVFVDREGAGKHLQAGAKKVLITAPGKGDIPTYVCGVNEEKYNPAEEIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRESADKELNGILAVCDEPLVSIDFRCXXXXXXXXXXXXXXXGDDMVKVVAWYDNEWGYSQRVVDLADIVANNWKS
Q41019_______________MASATLSMAAVANCSSTHASLQVSGKGFSEYSGLKSSSGFPCLRKYNEELRFQLVAFQTNAVGSSGQKRGVVEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDPDVQVAGNDGISVDGKVIKVVSDRNPVNLPWKDYEIDLVIEGPGVFVDREGAGKHLQAGAKKVLITAPGKGDIPTYVCGVNEDKYYPAEEIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRETADKELKGILAVCDEPLVSIDFRCSDVSSTVDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANNWKS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
783	2	97			0.927345
809	2	97			0.960269
811		97		2	0.964186
973		4		95	0.994598
1035	86		2		1.0
1382	0	97			0.971208
1468	0	3		94	0.999985
1529	94	1	4		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain