SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16901

Length: 2071 nt

UniGene Fasta

>sp_v3.0_unigene16901
ATGGGGGGTCTGAATTTCTATTACCGGTCGTTGCACTGCATCCTTTCATTCGATTAACGGGCGACCCTGTGGTCTTCCACGTGGACTCGAAAAGCGAGCCAAACAATCTCTGAGCCGTCCGCTAGTGCTGAATCGACGGCTGTTGTGAGAGGGTCCGGAAGGGCAGGTGGGAGTCGGAAGGGTTTTAGAGCGACTTCATCACCTGGCTATTCGCAGAGAGGCAGCAGGGTGTTTCTTAGACTTTTACATCAGTTTTCTTAGATTTCGTTCCTTTGGTTTTCGGATCGCAATGGCAATGGCGGCTTCCACCACGATGAGATCGTCTGTTACGGCGGGATCGTTTCGTGAAAATCATCGTCCTTCTGTGGCGGTTGATGCACAGATCCGATCAAAGATAACCAGAACCGATGGCACAGTCAGATTGCCTTTCGGAAGCTTTGGAAGCAATTTCTTCGGATCCACTGCAGAGTTTGGCCAGGGTTCAGCCTTACAATGTCAGAGTGCTAGGACTTTGCAGCCAGTTAGAGCTACTGCAACAGAAGCCCCTCCTAGAATTCAAAGATCCTCGGGAAAGGAGAGGACCAAGATAGGAATAAATGGATTTGGTCGTATTGGGAGGCTGGTTTTGCGTGTTGCATTGAGCAGGGAAGATATCGAAGTAGTTGCAATCAATGACCCTTTCATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCAACTCATGGGGTATACAAAGGGAGCTTGAAGATTGTTGATGATACGACTCTTGAAATTGATGGTCACAGTATTACTGTCAATTCTAAAAGGGATCCGTCAGAGATTCCCTGGGGTAACTATGGAGCTGAATATGTTGTAGAATCATCTGGAGTTTTTACAACAACCGAGAAGGCTTCTGCACATCTTAAGGGTGGAGCTAAGAAGGTTGTAATTTCTGCTCCATCAGCGGATGCACCCATGTTTGTGGTTGGAGTAAACGAAGGATCATATAAGCCTGAAATGTCTATTGTTTCAAATGCAAGCTGCACAACTAATTGCCTTGCTCCTCTTGCAAAGGTGGTGAATGAAGAATTTGGTATTGCTGAGGCCCTCATGACCACTGTTCATGCAACAACAGCTACACAGAAGACAGTAGATGGTCCATCTATGAAGGATTGGCGTGGAGGTCGTGGTGCTGGACAAAATATCATTCCAAGCTCAACTGGTGCTGCAAAGGCAGTTGGGAAGGTCCTTCCAGAGTTGAATGGAAAGCTAACTGGAATGGCTTTCCGTGTACCAACACCCAATGTCTCAGTTGTGGATCTGACATGTCGCCTTGCGAAACCAGCATCTTACGATGATATAAAAGCAGCAATGAAGGCCGCATCTGAAGGGTCACTAAAAGGCATCCTTGGATATACTGATGAAGATGTCGTTTCGAATGATTTTGTAGGTGATTCAAGGTCGAGTATCTTTGATGCTAAGGCTGGTATAGCCTTGAGTTCTACCTTTGTGAAACTTGTTTCTTGGTATGACAATGAGTGGGGATACAGCAACCGAGTGGTGGACTTGATCTCACACATGGCTTTAGTTGCTTCACGCAAATAGAGATTCTTCTATTTTGGAGTATTTGATGGGTCTTTTGTGGACCTCTAGCCTCGTTACGTAGTACACTCTAGGGAATGAGTTAAATTTTAGGATCCTTGGTGTGGTAATTGAAGAAAGCAGAAGGCAACCCAGTGTGTTTAGGTTGCCTGAGTATTTTATTTTGACAAATATGCTATCCATCATCTCTGGATGGTAAATTTTTGATGAAGTACTATTATGCAGATATTGGATCTTTTTTGGAATAAAATATATTCGCAGTAGATTTCATCTTTTCTGTTTTTAGAGTCGAGGATATGCGCATTGTTTAATGATGTGGTGTTACGGCATCTTCAGGGTTCTGAATCCCTCTCTGATTAATTTTTTTTGTACACTTGACATGATAATTTCTGCCCAAAGATAACCTGGTAAGTGTTGTCGCTTATGGTAGAATCTCTTGCTTCTTACTCGGAAATTTATGTTACATTCGACATTTTATCTAAT

Ace file of the UniGene sp_v3.0_unigene16901

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glyceraldehyde-3-phosphate dehydrogenase n=5 Tax=Pinaceae RepID=Q37264_PINSY	-	-	0.0	92%
FL-Next	tr=Glyceraldehyde-3-phosphate dehydrogenase; Pinus sylvestris (Scots pine). Plastid; Chloroplast.	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Sma3	Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating).	EC:1.2.1.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000173	-	0.0	-
Sma3	Glyceraldehyde-3-phosphate dehydrogenase, type I	IPR006424	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79530.1	GAPCP-1 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 chr1:29916232-29919088 REVERSE LENGTH=422	80%
RefSeq	Arabidopsis thaliana	NP_178071.1	glyceraldehyde 3-phosphate dehydrogenase [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002312235.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q37265

Fln msg:

Fln protein: MAMAASTTMRSSVTAGSFRENHRPSVAVDAQIRSKITRTDGTVRLPFGSFGSNFFGSTAEFGQGSALQCQSARTLQPVRATATEAPPRIQRSSGKERTKIGINGFGRIGRLVLRVALSREDIEVVAINDPFIDAKYMAYMFKYDSTHGVYKGSLKIVDDTTLEIDGHSITVNSKRDPSEIPWGNYGAEYVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEGSYKPEMSIVSNASCTTNCLAPLAKVVNEEFGIAEALMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLAKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIALSSTFVKLVSWYDNEWGYSNRVVDLISHMALVASRK*

Protein Length: 435

Fln nts: ATGGGGGGTCTGAATTTCTATTACCGGTCGTTGCACTGCATCCTTTCATTCGATTAACGGGCGACCCTGTGGTCTTCCACGTGGACTCGAAAAGCGAGCCAAACAATCTCTGAGCCGTCCGCTAGTGCTGAATCGACGGCTGTTGTGAGAGGGTCCGGAAGGGCAGGTGGGAGTCGGAAGGGTTTTAGAGCGACTTCATCACCTGGCTATTCGCAGAGAGGCAGCAGGGTGTTTCTTAGACTTTTACATCAGTTTTCTTAGATTTCGTTCCTTTGGTTTTCGGATCGCA_-_ATGGCAATGGCGGCTTCCACCACGATGAGATCGTCTGTTACGGCGGGATCGTTTCGTGAAAATCATCGTCCTTCTGTGGCGGTTGATGCACAGATCCGATCAAAGATAACCAGAACCGATGGCACAGTCAGATTGCCTTTCGGAAGCTTTGGAAGCAATTTCTTCGGATCCACTGCAGAGTTTGGCCAGGGTTCAGCCTTACAATGTCAGAGTGCTAGGACTTTGCAGCCAGTTAGAGCTACTGCAACAGAAGCCCCTCCTAGAATTCAAAGATCCTCGGGAAAGGAGAGGACCAAGATAGGAATAAATGGATTTGGTCGTATTGGGAGGCTGGTTTTGCGTGTTGCATTGAGCAGGGAAGATATCGAAGTAGTTGCAATCAATGACCCTTTCATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCAACTCATGGGGTATACAAAGGGAGCTTGAAGATTGTTGATGATACGACTCTTGAAATTGATGGTCACAGTATTACTGTCAATTCTAAAAGGGATCCGTCAGAGATTCCCTGGGGTAACTATGGAGCTGAATATGTTGTAGAATCATCTGGAGTTTTTACAACAACCGAGAAGGCTTCTGCACATCTTAAGGGTGGAGCTAAGAAGGTTGTAATTTCTGCTCCATCAGCGGATGCACCCATGTTTGTGGTTGGAGTAAACGAAGGATCATATAAGCCTGAAATGTCTATTGTTTCAAATGCAAGCTGCACAACTAATTGCCTTGCTCCTCTTGCAAAGGTGGTGAATGAAGAATTTGGTATTGCTGAGGCCCTCATGACCACTGTTCATGCAACAACAGCTACACAGAAGACAGTAGATGGTCCATCTATGAAGGATTGGCGTGGAGGTCGTGGTGCTGGACAAAATATCATTCCAAGCTCAACTGGTGCTGCAAAGGCAGTTGGGAAGGTCCTTCCAGAGTTGAATGGAAAGCTAACTGGAATGGCTTTCCGTGTACCAACACCCAATGTCTCAGTTGTGGATCTGACATGTCGCCTTGCGAAACCAGCATCTTACGATGATATAAAAGCAGCAATGAAGGCCGCATCTGAAGGGTCACTAAAAGGCATCCTTGGATATACTGATGAAGATGTCGTTTCGAATGATTTTGTAGGTGATTCAAGGTCGAGTATCTTTGATGCTAAGGCTGGTATAGCCTTGAGTTCTACCTTTGTGAAACTTGTTTCTTGGTATGACAATGAGTGGGGATACAGCAACCGAGTGGTGGACTTGATCTCACACATGGCTTTAGTTGCTTCACGCAAATAG___AGATTCTTCTATTTTGGAGTATTTGATGGGTCTTTTGTGGACCTCTAGCCTCGTTACGTAGTACACTCTAGGGAATGAGTTAAATTTTAGGATCCTTGGTGTGGTAATTGAAGAAAGCAGAAGGCAACCCAGTGTGTTTAGGTTGCCTGAGTATTTTATTTTGACAAATATGCTATCCATCATCTCTGGATGGTAAATTTTTGATGAAGTACTATTATGCAGATATTGGATCTTTTTTGGAATAAAATATATTCGCAGTAGATTTCATCTTTTCTGTTTTTAGAGTCGAGGATATGCGCATTGTTTAATGATGTGGTGTTACGGCATCTTCAGGGTTCTGAATCCCTCTCTGATTAATTTTTTTTGTACACTTGACATGATAATTTCTGCCCAAAGATAACCTGGTAAGTGTTGTCGCTTATGGTAGAATCTCTTGCTTCTTACTCGGAAATTTATGTTACATTCGACATTTTATCTAAT

Fln Alignment:

Contig16901___GSFRENHRPSVAVDAQIRSKITRTDGTVRLPXXXXXXXXXXXTAEFGQGSALQCQSARTLQPVRATATEAPPRIQRSSGKERTKIGINGFGRIGRLVLRVALSREDIEVVAINDPFIDAKYMAYMFKYDSTHGVYKGSLKIVDDTTLEIDGHSITVNSKRDPSEIPWGNYGAEYVVESSGVFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEGSYKPEMSIVSNASCTTNCLAPLAKVVNEEFGIAEALMXXXXXXXXXXXXXDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLAKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIALSSTFVKLVSWYDNEWGYSNRVVDLISHMALVASRK
Q37265_______________GSFRENHRPSVAVDAQIRSKITSTDGTVRLPFGSFGSNFFGSTAEFGQGSALQCQSARTLQPVRATATEAPPRVQRSSGKERTKIGINGFGRIGRLVLRVALSKEDIEVVAINDPFIDAKYMAYMFKYDSTHGVYKGSLKIVDDTTLEIDGHRITVNSKRDPSEIPWGNYGAEYVVESSGAFTTTEKASAHLKGGAKKVVISAPSADAPMFVVGVNEGSYKPEMSIVSNASCTTNCLAPLAKVVNEEFGIAEALMTTVHATTATQKTVDGPSMKDWRGGRGAGQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDARSSIFDAKAGIALSSTFVKLVSWYDNEWGYSNRVVDLISHMALVASRK

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1367		12		87	0.992554
1492		97		2	0.97849
1602		2		96	0.994155
1839	93			2	0.999996
1848	1	48		50	1.0
1857		7		92	0.999999
1860	6	3		90	0.996531
1861	21	57			1.0
1863	4	40	4	52	1.0
1867	14	7		7	0.999974
1869	25	25		50	1.0
1870	33		66		1.0
1871	20			80	0.995493
1872	20			80	0.995493
1873	20			80	0.995493
1874	20			80	0.995493
1875	20			80	0.995493
1877	20		80		0.995493
1884	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain