SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16898

Length: 1445 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16898

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor AP2-EREBP n=1 Tax=Lotus japonicus RepID=B3IX32_LOTJA	-	-	6.0e-35	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	AP2/ERF domain-containing transcription factor	-	-	2.88667e-43	-

Source	Gene names
Sma3	24.t00032; 24.t00040; 25.t00062; 26.t00057; ACRE1; Aa1_7580; Aa6_7580; At1g04370; At2g33710; At3g23220; At4g17490; At4g17500; At5g07310; At5g07580; At5g13330; At5g43410; At5g51190; At5g61590; At5g61890; B1234D02.6; B1331F11.13; BIERF3; C635ERIPDM; CDBP; C

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQI3

Fln msg: Separated hits, possible frame ERROR between 278 and 287, atg_distance in limit (1-15): atg_distance = 8,

Fln protein: MSFLERIRSHLLEDLDGLYEESSLCAMMGNSQFDTSRNSSPEVESFIQSALAGDSVDDNRWETETETEMPTPAVKPSRPSLSVSxxxxESFDWEKFSVGRGFRNVASVTPPSVSPCLSTAWAKLPLNENDSEDMVLYGILKEAANEGWMPVTPKEETAMETKKEVDVFPVKKEAEVFPVKKEADFRQETRTQQPVAKKKNVGRHYRGVRQRPWGKFAAEIRDSARQGARVWLGTFNTAEEAAVAYDRAAYKMRGSKALLNFPLQVASGSNNTCSSVEKPKSNGEDFLQNLTSRKRERSPGDEVDSGRECRVKLEEFTRETEMMSKDMVDELLCGRMTTPPLTPSGIDMRIYNFLCPGQLMVN*

Protein Length: 364

Fln nts: AAGAACCACAACAATATGCAGAA_-_ATGAGCTTCCTGGAACGAATCCGGAGCCATTTACTTGAAGATTTAGACGGCCTATATGAAGAATCGTCCCTCTGTGCGATGATGGGAAATAGCCAGTTTGATACCAGCAGAAACTCGAGCCCTGAAGTAGAGAGCTTCATCCAGAGCGCACTCGCAGGCGATTCCGTCGACGACAACAGATGGGAAACGGAGACGGAGACGGAAATGCCGACTCCGGCCGTTAAGCCCTCGCGTCCCTCCTTATCCGTCTCCGTxxxxxxxxxTGAATCTTTCGACTGGGAGAAATTCTCTGTCGGCCGAGGATTCAGAAATGTCGCCAGTGTTACACCTCCGTCTGTCAGCCCTTGCTTATCCACCGCCTGGGCAAAGCTGCCGTTAAACGAAAACGATTCGGAGGACATGGTCTTGTACGGGATTCTCAAAGAGGCCGCCAACGAGGGATGGATGCCTGTAACGCCCAAGGAGGAGACGGCGATGGAAACGAAGAAGGAAGTCGATGTTTTTCCCGTCAAGAAAGAGGCCGAAGTCTTTCCCGTCAAGAAAGAGGCCGATTTCCGTCAAGAAACGCGAACACAGCAGCCGGTGGCGAAGAAGAAGAACGTGGGCAGGCATTACAGGGGCGTGCGGCAGAGACCGTGGGGGAAATTCGCCGCGGAGATAAGGGACTCTGCACGGCAAGGGGCTAGAGTTTGGCTTGGCACCTTCAATACCGCGGAGGAGGCCGCGGTCGCCTATGACCGTGCCGCTTACAAGATGCGGGGTTCTAAGGCTTTGCTTAATTTCCCGCTCCAAGTTGCTTCAGGGAGCAATAACACATGTAGCAGTGTAGAGAAACCAAAGAGTAATGGCGAAGATTTTCTTCAAAATCTCACCAGCAGGAAGAGGGAACGCAGTCCCGGTGATGAAGTCGATTCTGGCAGAGAATGCCGGGTGAAATTGGAAGAATTTACGAGGGAGACTGAGATGATGTCGAAGGATATGGTGGATGAGCTTTTATGTGGGAGGATGACAACACCGCCACTCACACCGAGTGGAATCGACATGAGAATCTACAATTTCCTCTGCCCTGGACAACTTATGGTGAACTGA___GGTTGTCCATTCTTTGGTGTATATACTTTCTCTACCATTTACAATTATTTCATTTTTTTTGTAATCCCTTCAGTTCATCTTGATCTTGATACTCTCCAAGGTATGGATTCCATGCTCCACAAAAGGTTTTTGTTTCAGTACTCTACTAAAGAAAATAATACAGAAATCTGTGTGAAAAAAGGATCTGTAATCAATGGCTAGATTTATTAGCTATTATGAATTTTCAGTATACAAGCGCCGAAATAAGGAGTGCACAGGAGATCAATTTCAGAGGCTATTCAGCAAATTGTGGAAGAGGCAGTAAGAAGGAAATGTAAATTTGTAATTCGAGAAG

Fln Alignment:

Contig16898___QYAEMSFLERIRSHLLEDLDGLYEESSLCAMMGNSQFDTSRNSSPEVESFIQSALAGDSVDDNRWXXXXXXXXXXXAVKPSRPSLSVSVxxxESFDWEKFSVGRGFRNVASVTPPSVSPCLSTAWAKLPLNENDSEDMVLYGILKEAANEGWMPVTPKEETAMETKKEVDVFPVKKEAEVFPVKKEADFRQETRTQQPVAK----KKNVGRHYRGVRQRPWGKFAAEIRDSARQGARVWLGTFNTXXXXXXXXXXXXXKMRGSKALLNFPLQVASGSNNTC----SSVEKPKSNGEDFLQNLTSRKRERSPGDEVDSGRECRVKLEEFTRETEMMSKDMVDELLCGRMTTPPLTPSGIDMRIYNFLCPGQLMVN
C0PQI3_______________EYTEMSVLDQIRSHLLGDFEPSF------FVTGNWGSDPTRNSSPEEENFIQTALTADSVDDSR--RETETETLIAAVKSSRPLLSVSVxxxESFDWEKISVDWALKN--SVTP-SVSPCFSAAWTKLPLDENDSEDMVLYGILKEAATKGWLPRTPKEEPVTEIKKEA----------ALPVKPDADIRQETGATPPPPPPPTVKNNAGRHYRGVRQRPWGKFAAEIRDSSRQGARVWLGTFTTAEEAALAYDRAAYKMRGSRALLNFPLQVGAEDSNTCNNNTSTIEKVESN--------LSKKRQREE-VEVQWNRQCRVRFE----DSNTMDHEMVEELLGGKLATPPLTPSGIDMSFTGFLSAGQLMVN

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
191		66		33	0.997452
193	66			33	0.997452
196	66			33	0.997452
198	66		33		0.997452
201	66		33		0.997452
623	88		11		0.923564
627			77	22	0.999999
630		77		22	0.999999
636		11		88	0.923564
655	80	20			0.999996
657	80		20		0.999996
666	20		80		0.999996
669	80		20		0.999996
675	11	88			0.923564
697	11	88			0.923564
699	11		88		0.923564
702	88		11		0.923564
720		10		90	0.90298
747		90	10		0.90298
750			90	10	0.90298
751			90	10	0.90298
1071	27	72			1.0
1152		33		66	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
610	621	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain