SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16862

Length: 2268 nt

UniGene Fasta

>sp_v3.0_unigene16862
CGTCGTGACCTTGGCTGTCACTCAAATTCCAATCATATCGTATAATCCACCTGTGCAGACCCGCTGGCAATGGCGAACACCATTTGTCTCTGAGATCAGTGCGCTACCTTCATCCAATCCCCTTCAACAAACCTCCACGTCGGTTTTGTCCTCGTCCACCTCATCACCGGATTCTCTCGGCCCCTGCATGCTTCAGGTTTCCTCGGTCGTCCCGCAGCAATCCAGCAGGTTTGTTATCTAGATTCTAGAGTATCTGGATTCTCAACATCTAGTCCAACATTTTAGGGTTCTGCACAAAGCAATTTGAAAGATGAAAGAATAACCTCAGTGTGCTCTTAAATTATGGACACAGAAGAGATGGACACACCGACAAAAACAACAAAGACGCCTACATCACAGGAACAAACTTCCACAAGCACTCCCGTGGCTTATCCTGAGTGGGCTGCACCAATACAGGCTCTATATAATTCTGGAAAGGCACCAGTCCCTCCTGGTTACTTTCATTCTGCTGTAGCATCTAGTCCACAGGCTCACCCATATATGTGGGGACTCCAGCATATGATGCCGCCATATGGGACACCACCTCCTCCATATGTTGCTATGTATTCTCATGGAGCAATGTATACTCATCCATCCATGCCTGCGGGTGCACATCTGTATGGCTCTTATGGGATGTCATCTTCAGGAGTTTCTAATGAAGTTACAGCTGGTGCAGTAACTGCAAGTGTAGAAGGAGAAACAAAGTCTTCTCAGGCCAAGGATCGAAGTCCTCTGAAAAGTACCAAAGGAAGCTTAGGCAGCCTTAGTATGCTTACTGGCAAGACTAATGAAACTGGAAAAGAAACAACTGCAAATGGTGTTTTCTCACAAAGTGGTGAAAGTGGGAGCGAAGGATCAAGTGAAGGAAGCGATGGGAATTCTCCAAATGGTTCACAATCAGGACAGAAAACACACTTTGAACAAGGATCTACAGAAGCTGATGAGGCTCAAAATGGTAGTGCAACATCTCGCAATGGACAAATTGCAAACACAGACAGGGCATCTGGAGGACAAGTAACAACTATTAATTCAAGCCCAGCCATGGCAGCAGTGCCAATGTCTCTGCCGGGTACATCTGGCACTGCTACAGGTCCTATGACCAACTTAAACATTGGGATGGACTACTGGTGTGTGACAGGTCCTACACCTCTTTCCACTATGCGTGGACAACTTCCTTTATCACCAACAACATCAACAATCATTCCTTCTGCTCAGAACATGCCAGCTATGGGAACAGAGCTATCCCTACAGGATGAGAGAGAGCTTAAAAGGCAAAGAAGAAAACAATCAAATAGAGAATCTGCACGGAGATCAAGGATGCGTAAACAGGCTGAGTGTGAAGAACTAGCACGCCGGGTTGAAGAGCTTAAAAGTGAAAATTTCGCACTAAGGACAGAGTTGACTCGGTTGCAGGAAGAATGCGAAAAGCTAACTGCCAAAAATAATTCTCTCACAGAAGAGCTTAAGAATGTTCATGACAATGAATCTAGAGAAACCAGAGTGAAGGATGAACTGGAAAATGCTGATACAGAACAGTGAGAACAGCAAAATAATATTGCAGAAGCAAGCATCAGAGGATCTGTAAAGAGATCATTAGGAGGAGCCATCACTTAATATAGGTGGACGATCTTGACTAATCTTCAGTGGAAAATCAATGTCAAGTAGATTGTATGTCTGCAAATTAGTTTAATATAGATTTCATCTGATCTTCAAAGTGTTCTGGAGCCCCAGAAATTTCTGGCTATTAACAGTCATGCATGATTTGAACTCCCATGTGATACATCTCGTTATAGGAATTCAGCTACCTCTGTAGGCTTTTTTCCATTTACAGGGGGGTGTATTTAAGAAATGAATTTTCTACGGGATTGGAACATCACTTGATTGAATGACTTGAAGTGTTTGCAAGCAGTTATACGGATTCTCAAAATGAGAAAATCTTCTTGGGCACTCATTTAAATTAGCTTTAGTGTGCTCTCACCTATTGCTTACTGATTGCAGGAAGTAAAGGTAGGGCCTGAAATAAACACTTTTGAAGTAAGAGTTGAATAAACATTTTTGGACATCAATGAACACCTGGTGAAAGCTTAAAGGCTACATCTTGTAATACTGGAAACATTCTCATCTTTAATGGTGAATGACCTACTCCATCTATTATATCGTATCAACTGCTGTGCTCCGGGATGATTGTTTGTTGATGTCTTTGACCTCTAGAATGTAATATTATATGAC

Ace file of the UniGene sp_v3.0_unigene16862

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam07777, MFMR, G-box binding protein MFMR	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Transcription factor HBP-1a	-	-	4.014e-15	-

Source	Gene names
Sma3	15.PETUNIA.8; 15.POTATO.14; At1g32150; At2g35530; CPRF-3; CPRF3; CPRF4a; CPRF4b; F3C3.7; GBF2; GBF2A; GSVIVT00014657001; GSVIVT00015666001; GSVIVT00024984001; LOC_Os03g13614; LOC_Os12g13170; MICPUCDRAFT_46386; MICPUCDRAFT_9929; MICPUN_105183; MICPUN_74241

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	transcription, DNA-dependent	GO:0006351	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	cAMP response element binding (CREB) protein	IPR001630	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	G-box binding, MFMR	IPR012900	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002304358.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB03

Fln msg: your sequence is longer than subject: 412 - 301

Fln protein: MDTEEMDTPTKTTKTPTSQEQTSTSTPVAYPEWAAPIQALYNSGKAPVPPGYFHSAVASSPQAHPYMWGLQHMMPPYGTPPPPYVAMYSHGAMYTHPSMPAGAHLYGSYGMSSSGVSNEVTAGAVTASVEGETKSSQAKDRSPLKSTKGSLGSLSMLTGKTNETGKETTANGVFSQSGESGSEGSSEGSDGNSPNGSQSGQKTHFEQGSTEADEAQNGSATSRNGQIANTDRASGGQVTTINSSPAMAAVPMSLPGTSGTATGPMTNLNIGMDYWCVTGPTPLSTMRGQLPLSPTTSTIIPSAQNMPAMGTELSLQDERELKRQRRKQSNRESARRSRMRKQAECEELARRVEELKSENFALRTELTRLQEECEKLTAKNNSLTEELKNVHDNESRETRVKDELENADTEQ*

Protein Length: 413

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCCAATCATATCGTATAATCCACCTGTGCAGACCCGCTGGCAATGGCGAACACCATTTGTCTCTGAGATCAGTGCGCTACCTTCATCCAATCCCCTTCAACAAACCTCCACGTCGGTTTTGTCCTCGTCCACCTCATCACCGGATTCTCTCGGCCCCTGCATGCTTCAGGTTTCCTCGGTCGTCCCGCAGCAATCCAGCAGGTTTGTTATCTAGATTCTAGAGTATCTGGATTCTCAACATCTAGTCCAACATTTTAGGGTTCTGCACAAAGCAATTTGAAAGATGAAAGAATAACCTCAGTGTGCTCTTAAATT_-_ATGGACACAGAAGAGATGGACACACCGACAAAAACAACAAAGACGCCTACATCACAGGAACAAACTTCCACAAGCACTCCCGTGGCTTATCCTGAGTGGGCTGCACCAATACAGGCTCTATATAATTCTGGAAAGGCACCAGTCCCTCCTGGTTACTTTCATTCTGCTGTAGCATCTAGTCCACAGGCTCACCCATATATGTGGGGACTCCAGCATATGATGCCGCCATATGGGACACCACCTCCTCCATATGTTGCTATGTATTCTCATGGAGCAATGTATACTCATCCATCCATGCCTGCGGGTGCACATCTGTATGGCTCTTATGGGATGTCATCTTCAGGAGTTTCTAATGAAGTTACAGCTGGTGCAGTAACTGCAAGTGTAGAAGGAGAAACAAAGTCTTCTCAGGCCAAGGATCGAAGTCCTCTGAAAAGTACCAAAGGAAGCTTAGGCAGCCTTAGTATGCTTACTGGCAAGACTAATGAAACTGGAAAAGAAACAACTGCAAATGGTGTTTTCTCACAAAGTGGTGAAAGTGGGAGCGAAGGATCAAGTGAAGGAAGCGATGGGAATTCTCCAAATGGTTCACAATCAGGACAGAAAACACACTTTGAACAAGGATCTACAGAAGCTGATGAGGCTCAAAATGGTAGTGCAACATCTCGCAATGGACAAATTGCAAACACAGACAGGGCATCTGGAGGACAAGTAACAACTATTAATTCAAGCCCAGCCATGGCAGCAGTGCCAATGTCTCTGCCGGGTACATCTGGCACTGCTACAGGTCCTATGACCAACTTAAACATTGGGATGGACTACTGGTGTGTGACAGGTCCTACACCTCTTTCCACTATGCGTGGACAACTTCCTTTATCACCAACAACATCAACAATCATTCCTTCTGCTCAGAACATGCCAGCTATGGGAACAGAGCTATCCCTACAGGATGAGAGAGAGCTTAAAAGGCAAAGAAGAAAACAATCAAATAGAGAATCTGCACGGAGATCAAGGATGCGTAAACAGGCTGAGTGTGAAGAACTAGCACGCCGGGTTGAAGAGCTTAAAAGTGAAAATTTCGCACTAAGGACAGAGTTGACTCGGTTGCAGGAAGAATGCGAAAAGCTAACTGCCAAAAATAATTCTCTCACAGAAGAGCTTAAGAATGTTCATGACAATGAATCTAGAGAAACCAGAGTGAAGGATGAACTGGAAAATGCTGATACAGAACAGTGA___GAACAGCAAAATAATATTGCAGAAGCAAGCATCAGAGGATCTGTAAAGAGATCATTAGGAGGAGCCATCACTTAATATAGGTGGACGATCTTGACTAATCTTCAGTGGAAAATCAATGTCAAGTAGATTGTATGTCTGCAAATTAGTTTAATATAGATTTCATCTGATCTTCAAAGTGTTCTGGAGCCCCAGAAATTTCTGGCTATTAACAGTCATGCATGATTTGAACTCCCATGTGATACATCTCGTTATAGGAATTCAGCTACCTCTGTAGGCTTTTTTCCATTTACAGGGGGGTGTATTTAAGAAATGAATTTTCTACGGGATTGGAACATCACTTGATTGAATGACTTGAAGTGTTTGCAAGCAGTTATACGGATTCTCAAAATGAGAAAATCTTCTTGGGCACTCATTTAAATTAGCTTTAGTGTGCTCTCACCTATTGCTTACTGATTGCAGGAAGTAAAGGTAGGGCCTGAAATAAACACTTTTGAAGTAAGAGTTGAATAAACATTTTTGGACATCAATGAACACCTGGTGAAAGCTTAAAGGCTACATCTTGTAATACTGGAAACATTCTCATCTTTAATGGTGAATGACCTACTCCATCTATTATATCGTATCAACTGCTGTGCTCCGGGATGATTGTTTGTTGATGTCTTTGACCTCTAGAATGTAATATTATATGAC

Fln Alignment:

Contig16862___NEVTAGAVTASVEGETKSSQAKDRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVFXXXXXXXXXXXXXXXXXXXXXXXQSGQKTHFEQGSTEADEAQNGSATSRNGQIANTDRASGGQVTTINSSPAMAAVPMSLPGTSGTATGPMTNLNIGMDYWCVTGPTPLSTMRGQLPLSPTTSTIIPSAQNMPAMGTELSLQDERELKRQRRKQSNRESARRSRMRKQAECEELARRVEELKSENFALRTELTRLQEECEKLTAKNNSLTEELKNVHDNESRETRVKDELENADTEQ
D5AB03_______________DEVTAGPVTASVEGETKSTQAKDRSPLKNTKGSLGSLSMLTGKTNETGKGTTANGVFSQSGESGSEGSSEGSDGNSPNGSHSGQKTRFEQGSTEADEAQNGHATSYNGQSANTNSASGSQVTTMNSSPTMAAVAMSLPVTSGTVTGPMTNLNIGMDYWCVAAPTPLSSMRGQLPVSSTTAAIIPSAQNMPAMGTELCLQDERELKRQRRKQSNRESARRSRMRKQAECEELARRVEELKNENVSLRTELARLREECEKLSSENNSLTEQLKNVHDKESRETKVKDELQKADAEQ

SNPs (tot: 6)

Position	A %	G %	T %	Probability
1623	10	90		0.90298
1625	88	11		0.923564
1626	88	11		0.923564
1627	88	11		0.923564
1693	16		83	0.994512
1696	83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain