SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16854

Length: 1785 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16854

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine desulfurylase, putative n=1 Tax=Ricinus communis RepID=B9SB60_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cysteine desulfurase activity	GO:0031071	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cysteine metabolic process	GO:0006534	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Cysteine desulfurase, SufS	IPR010970	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08490.1	ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase chr1:2685980-2688547 REVERSE LENGTH=463	73%
RefSeq	Arabidopsis thaliana	NP_172325.2	cysteine desulfurase 2 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002314018.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXQ9

Fln msg:

Fln protein: MARAIPVCCTHPRPYTIAIGSGSGRGFRSHTGMKLSVYFQSKSLFSGRKNGVSRAMSAVSTPLSVNDNRGTASLGEITKPDFPILKQEVNGSKLVYLDNAATSQKPQFVIDAVREYYEAYNSNVHRGIHFLSARATDEYELARKKVADFINAASSREIVFTRNATEAINLVAYSWGLTNLKAGDEIILSIAEHHSVIVPWQIVAQKTGAVLKFVNLNEEEVPDLEQLKQLLCKKTKLVAVHHVSNTLGCILPIQEIVHWTQKYGARVLVDACQSVPHMSVDVQQLGVDFLVASSHKMCGPTGVGFLYGKSELLTSMPPFLGGGEMIDDVSLDHSTYAEPPSRFEAGTPAIGEAIGLGKAIDYLLGIGMQKIHEYELELANYLYQSLSSVSNVRIYGPAPNTTSGRAALCSFTVENVHPTDIATFLDQQHGVAVRSGHHCAQPLHHYLGTNASCRASLYFYNTKDDVDAFIKGLKDTISFFTSFQ*

Protein Length: 486

Fln nts: ATGGGGACGCCCCTTTGTCTTGATCGGCGCGGCTGGAGAACGAGTTAGGAAAATATTATTATTGTAAGGTATGGAAGTCAAGACAAGATTATAAGCCCAACACAACCGAACGGGGGCGAAAAATGCAGAGCAGATAAGACCTGAGACACAGTAGAATCAGTCA_-_ATGGCGAGAGCAATTCCAGTGTGTTGCACGCACCCCCGACCTTATACCATAGCTATTGGCAGTGGTAGTGGTCGCGGTTTCCGGTCGCACACTGGAATGAAGCTAAGCGTTTACTTCCAATCGAAATCACTGTTTTCAGGACGAAAAAATGGCGTGAGCAGGGCCATGTCGGCCGTTTCCACCCCTCTCAGTGTCAATGACAATCGGGGGACGGCCTCGCTCGGCGAAATCACTAAGCCAGATTTCCCCATTCTTAAACAGGAAGTCAATGGTTCAAAGCTAGTCTATTTAGATAATGCTGCAACATCACAGAAACCACAATTTGTTATAGATGCAGTAAGAGAATATTATGAGGCCTATAATTCAAATGTGCATCGTGGAATTCATTTTTTAAGTGCAAGGGCAACTGATGAATATGAACTTGCTAGAAAGAAGGTAGCAGATTTTATCAATGCAGCAAGCTCCAGGGAAATTGTCTTCACACGTAATGCAACTGAGGCAATCAATCTAGTTGCATATTCATGGGGTCTCACAAACTTAAAGGCAGGAGATGAGATTATATTGTCAATTGCTGAGCATCACAGTGTAATAGTTCCATGGCAAATTGTTGCTCAGAAGACTGGAGCTGTTTTAAAATTTGTTAACTTGAATGAGGAGGAAGTTCCAGATTTAGAACAGCTAAAACAGCTTTTATGCAAGAAGACTAAGCTCGTTGCTGTACATCATGTGTCTAACACACTTGGATGTATTCTTCCTATTCAAGAAATTGTGCACTGGACACAGAAGTATGGGGCAAGAGTGCTGGTGGATGCATGCCAAAGTGTTCCACATATGTCAGTTGATGTACAGCAGCTAGGAGTTGATTTCCTCGTTGCTTCCTCACATAAGATGTGCGGGCCTACAGGCGTTGGGTTTTTGTATGGGAAAAGTGAGCTGTTGACATCAATGCCTCCATTTTTAGGTGGTGGGGAAATGATTGATGATGTATCTCTGGACCATTCTACATACGCAGAGCCTCCTTCTAGATTTGAGGCGGGCACTCCAGCTATTGGTGAGGCCATAGGACTTGGGAAAGCAATAGACTACTTGTTGGGCATTGGAATGCAGAAGATTCATGAATACGAGCTGGAGTTGGCAAATTATCTTTATCAGAGCTTGTCAAGTGTCTCTAATGTGCGGATTTATGGACCTGCTCCAAACACAACTAGTGGACGTGCTGCACTTTGTTCTTTTACCGTGGAAAATGTTCATCCAACTGACATTGCTACTTTTCTTGATCAACAGCACGGTGTTGCAGTTCGCTCTGGACATCACTGCGCTCAACCACTTCACCATTACTTGGGAACAAATGCAAGTTGTAGAGCAAGTCTCTATTTTTACAATACAAAAGATGACGTGGATGCTTTCATTAAGGGACTTAAAGATACTATCAGTTTCTTTACTTCATTTCAGTGA___ACCCATTATAGGGTTATGGTCATCTTGTTTTAGTATTATTTTAGGGTCACGAGTTTTTTTGTTTTCTGCTTTTAATTGTATTTAAGTTGAGGTAAAGACGGATATGTAATAAATGGCCTTGTAAATAAATATGTATCACCTAAGTCACCTAACACAGGGATTTGGGA

Fln Alignment:

Contig16854___MARAIPVCCTHPRPYT-IAIGSGSGRGFRSHTGMKLSVYFQSKSLFSGRKNGVSRAMSAVSTPLSVNDNRGTASLGEITKPDFPILKQEVNGSKLVYLDNAATSQKPQFVIDAVREYYEAYNSNVHRGIHFLSARATDEYELARKKVADFINAASSREIVFTRNATEAINLVAYSWGLTNLKAGDEIILSIAEHHSVIVPWQIVAQKTGAVLKFVNLNEEEVPDXXXXXXXXXXXXXXVAVHHVSNTLGCILPIQEIVHWTQKYGARVLVDACQSVPHMSVDVQQLGVDFLVASSHKMCGPTGVGFLYGKSELLTSMPPFLGGGEMIDDVSLDHSTYAEPPSRFEAGTPAIGEAIGLGKAIDYLLGIGMQKIHEYELELANYLYQSLSSVSNVRIYGPAPNTTSGRAALCSFTVENVHPTDIATFLDQQHGVAVRSGHHCAQPLHHYLGTNASCRASLYFYNTKDDVDAFIKGLKDTISFFTSFQ
A9NXQ9_______________MARAIPVGCMHPRSYSNITIDSSNGRGLQSQMGMKRSFYFQSKCLFSRQKRGVGRAMSAVSTPLNVNANPETASLGEITKPDFPILKQEVNGSRLVYLDNAATSQKPQFVIDAVREYYEAYNANVHRGIHFLSAKATDEYELARKKVADFINAGGSREIVFTRNATEAINLVAYSWGLTNLKAGDEIILSIAEHHSVIVPWQIVAQKTGAVLKFVNLNEREVPDLEQLKQLLCEKTKLVAIHHVSNTLGCILPIQEIVHWTQKYGARVLVDACQSVPHMSVDVQQLGVDFLVASSHKMCGPTGIGFLYGKSELLTSMPPFLGGGEMIADVFLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQRIHEYELELANYLYQSLSNVSNVRIYGPAPNATSGRAALCSFTVENVHPTDIATFLDQQHGVAVRSGHHCAQPLHRYLGTNASCRASLYFYNTKDEVDTFIKGLKDTISFFTSFQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
209	80	20			0.995493
225			80	20	0.995493
256			80	20	0.995493
306	33		66		0.997452
586			10	90	0.90298
1145		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain