SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16842

Length: 2604 nt

UniGene Fasta

>sp_v3.0_unigene16842
TGTTCATATCCTTCATATGAGCTGTATATCATTTGAGTGATGTCTGCAGCAAATTCAGCAGCCAAGGTAGCCCCATGGCTGGGCTTTGCAGCTGCTGTTTGGATTCAGATAGCCTCTGGCAATGCATACAACTTTCCCCTGTATTCACACAAGATGAAGGGCGTTTTAAAATACAGCCAAGGACAGCTGAACAACCTGGGCGTGGCTAATGACGTTGGAGAGAATGTGGGTCTTCTGGCAGGGTTCATATGCAACAAGATACCGCCATGGGGCATTCTTATTATTGGCTCTGCTGCTAGTTTCTTCGGTTATGGCCTCATCTGGCTCGTCTTGAGCGAGAGAATAAGTCCTCTGCCATATTGGGCGATGTGGCTTGCACTATGCCTTGCTGCAAATAGTGCAACATGGTTCAATACAGCTGTCCTTGTCACCAATATGACGAAATTTCCCTCAAAGCAGAGGCACAGTTGCTGGCATTCTCAAGGGAATTGCTGGACTTAGCGCTGCAGTATTTACTGAAATTTTCACTGGGTTTCTTAGTGAGAGTTCCAAAAATCTTGTTGCTTTTCCTGGCAGTGGCTCCTCTTGTAGTCTGCTTGCTTGTGATGTATTTTATTAGGCCTTGCACACCAGCTTCTGGAGAAGATGCAGAAGAGCATAGATACTTTGTTTTTATCCAAGCGATTAGCATTACTTTAGCTCTGTATCTCCTTTCAATTTCTATTGCAAATTATTTTTTATCTTTAGAAAGATATCCTATTTCGAAGCTATTTCTAGTTGTAATGCTGCTGTTTCTCTTGTCACCAACATTAATTCCTCTGAAATTGACATTACGTGCACTCAAGGAAGACAGTGAATATATACGGAAGTTTCTTGGCTTGCAGATGGACCCTTGTAGAGAACCACTTCTTGGTAAAGAAGAAAAAGGCCCAGACTTGAAGCCTAGTGCAGATAAGAAGACTGCTGAATTTCTATATATTAGTAATCCTGTATCAAACATGTCAAAGGACAATAGTAGTGAATTGCAGAGACGATTAGAAGGCTTGCCTTTAACAAGATCCTCTTCGAGTCTAAAGTATACAGCGTTTCCTGAAGGTGAGGACTTGAACCTTGGTATTCTATTAGCTGAAGGAGAAGGAGCTATCAGGAAAAAGAGAAGACCAAGGCGTGGAGAAGATTTCAAACTTCTTCAAGCTTTGGTAAAAGCTGACTTCTGGCTGCTCTTTGTAGTCTTCTTCTGTGGGGTTGGTTCTGGGGTTACAGTTCTCAATAATCTGGCACAAATAGGACTGGCTGAAGGCTATCAAGATGTCACAATCCTGTTAACATTAATTGGTGTCTGCAACTTCATTGGGCGTCTTGGCGGGGGCGTTCTCTCAGAATACTATGTTAGGCAAAAGGCCTTTCCTCGGACGGTTTGGATGACAGCTACACAGGCTCTTATGATAGGGGTCTTTCTCTTCTTTGCCTCAGGTCTTCCTGGATCTATTCATATCTCTTCGTCCGTACTAGGAATTTGTTATGGAGTACAGTTCTCGGTTATGGTTCCAACGGCTTCGGAGCTCTTCGGGTTGAAGCACTTTGGCATAATTTACAATTTTCTGACAATAGGGAATCCACTGGGAGCTTTCCTCTTTTCTGGTCTCCTTGCTGGATACATATACGATAAAGAAGCTCAAAGGCAGGGTGGCCATTCTTATCGAACGATCATGGGTGACACCAATGTTGACTGTTTAGGACCTAACTGCTTCAGGCTTACCTTTCTTATCATGGCAGGGGTGTGTGCTTTTGGGGTTCTAATGAGCATTATTCTTACAATCCGGATAAGGCCAGTTTATGAGACACTGTATGGCAGGAGTTCCTTCTGCATTCAGAAAACAATGGATACAGAAGAATTAACCTTGGAGAAGGGATCAAAAGCTTAACATTGGTACACCCTTTTAAAGTCTAGTAAGTGTTCAGAAACCCTGTTGCTGTTCTTGATTTCAAGGTAACTCACTGTGCTGTTCTTGATTTCAATGTAACTCAGTTGATTAGTAACCCGAAATATATCTTTTAGTTCGGGGTGGAGAATGAAGTTTGTATAATTGTTAATATATTGTGTTTGAAAGAAAGGTTTAGGGTTTTTATCGGCTCAAGGAATCTAGCATCTTGAGTGTTGATTTTTGCAGAATTGTAACTGCCAGTTTCTATTTACTGTAAAGTTTTTACGGCATCCTGTTTAGTTTGATGCGAGTACACAGTTTCAAGGGACAGAATCGTGTACTGTCCAAAGCATAACCAGTTGCTATCCAAGTTCTGTAAGTTGCCCGTTAGATGATACCACTTCAAAGAGACATTATGATAAGTTCGGGCGAAAGACCAGGACAGTCTCCAGGATTTAAATTATGTTTAATATTTTCTTCTCCAGTTATACCTTATTCTGTAATATACGTTGTAAAAGAAGTTGACAAAGCGCTCGAATGAGAACCTGATGTTAGTGAGTACCTTGGGTAAGCCCCAGTTTGGTTTTTGGGTAAAAAGTGCCCTCTAAGCATAAGCGTGTTCGAATTCGAATTCTAGGTTGTGTTTGTTTATTTCATTAATCAAAATATATTAATTAGC

Ace file of the UniGene sp_v3.0_unigene16842

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nodulin family protein [Arabidopsis thaliana] gb\|AAF27120.1\|AC018849_8 nodulin-like protein; 38383-40406 [Arabidopsis thaliana] gb\|AAK59618.1\| putative nodulin protein [Arabidopsis thaliana] gb\|AAL07191.1\| putative nodulin protein [Arabidopsis thaliana] g	-	-	0.0	39%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	65%
Sma3	Nodulin-like protein	-	-	1.318e-11	-

Source	Gene names
Sma3	AT4G34950; At1g18940; At1g80530; CTV.14; GSVIVT00005663001; GSVIVT00033229001; M4E13.10; OJ1112_D12.6; OJ1575_B01.18; OSIGBa0112M24.2; OSJNBa0014K14.3; OSJNBa0035I03.15; Os04g0502800; Os06g0179200; Os09g0536700; OsI_16534; OsI_21894; OsI_28471; OsI_28473;

Source	InterPros	Term	Type	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002331009.1	predicted protein [Populus trichocarpa]	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9N6Z0

Fln msg: Overlapping hits, possible frame ERROR between 450 and 440, and possible frame ERROR between 580 and 606, your sequence is longer than subject: 630 - 580

Fln protein: MSAANSAAKVAPWLGFAAAVWIQIASGNAYNFPLYSHKMKGVLKYSQGQLNNLGVANDVGENVGLLAGFICNKIPPWGILIIGSAASFFGYGLIWLVLSERISPLPYWAMWLALCLAANSATWFNTAVLVTNMxxxxxQSRGTVAGILKGIAGLSAAVFTEIFTGFLSESSKNLVAFPGSxxxxxxxxxVMYFIRPCTPASGEDAEEHRYFVFIQAISITLALYLLSISIANYFLSLERYPISKLFLVVMLLFLLSPTLIPLKLTLRALKEDSEYIRKFLGLQMDPCREPLLGKEEKGPDLKPSADKKTAEFLYISNPVSNMSKDNSSELQRRLEGLPLTRSSSSLKYTAFPEGEDLNLGILLAEGEGAIRKKRRPRRGEDFKLLQALVKADFWLLFVVFFCGVGSGVTVLNNLAQIGLAEGYQDVTILLTLIGVCNFIGRLGGGVLSEYYVRQKAFPRTVWMTATQALMIGVFLFFASGLPGSIHISSSVLGICYGVQFSVMVPTASELFGLKHFGIIYNFLTIGNPLGAFLFSGLLAGYIYDKEAQRQGGHSYRTIMGDTNVDCLGPNCFRLTFLIMAGVCAFGVLMSIILTIRIRPVYETLYGRSSFCIQKTMDTEELTLEKGSKA*

Protein Length: 631

Fln nts: TGTTCATATCCTTCATATGAGCTGTATATCATTTGAGTG_-_ATGTCTGCAGCAAATTCAGCAGCCAAGGTAGCCCCATGGCTGGGCTTTGCAGCTGCTGTTTGGATTCAGATAGCCTCTGGCAATGCATACAACTTTCCCCTGTATTCACACAAGATGAAGGGCGTTTTAAAATACAGCCAAGGACAGCTGAACAACCTGGGCGTGGCTAATGACGTTGGAGAGAATGTGGGTCTTCTGGCAGGGTTCATATGCAACAAGATACCGCCATGGGGCATTCTTATTATTGGCTCTGCTGCTAGTTTCTTCGGTTATGGCCTCATCTGGCTCGTCTTGAGCGAGAGAATAAGTCCTCTGCCATATTGGGCGATGTGGCTTGCACTATGCCTTGCTGCAAATAGTGCAACATGGTTCAATACAGCTGTCCTTGTCACCAATATGxxxxxxxxxxxxxxxCAAAGCAGAGGCACAGTTGCTGGCATTCTCAAGGGAATTGCTGGACTTAGCGCTGCAGTATTTACTGAAATTTTCACTGGGTTTCTTAGTGAGAGTTCCAAAAATCTTGTTGCTTTTCCTGGCAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGATGTATTTTATTAGGCCTTGCACACCAGCTTCTGGAGAAGATGCAGAAGAGCATAGATACTTTGTTTTTATCCAAGCGATTAGCATTACTTTAGCTCTGTATCTCCTTTCAATTTCTATTGCAAATTATTTTTTATCTTTAGAAAGATATCCTATTTCGAAGCTATTTCTAGTTGTAATGCTGCTGTTTCTCTTGTCACCAACATTAATTCCTCTGAAATTGACATTACGTGCACTCAAGGAAGACAGTGAATATATACGGAAGTTTCTTGGCTTGCAGATGGACCCTTGTAGAGAACCACTTCTTGGTAAAGAAGAAAAAGGCCCAGACTTGAAGCCTAGTGCAGATAAGAAGACTGCTGAATTTCTATATATTAGTAATCCTGTATCAAACATGTCAAAGGACAATAGTAGTGAATTGCAGAGACGATTAGAAGGCTTGCCTTTAACAAGATCCTCTTCGAGTCTAAAGTATACAGCGTTTCCTGAAGGTGAGGACTTGAACCTTGGTATTCTATTAGCTGAAGGAGAAGGAGCTATCAGGAAAAAGAGAAGACCAAGGCGTGGAGAAGATTTCAAACTTCTTCAAGCTTTGGTAAAAGCTGACTTCTGGCTGCTCTTTGTAGTCTTCTTCTGTGGGGTTGGTTCTGGGGTTACAGTTCTCAATAATCTGGCACAAATAGGACTGGCTGAAGGCTATCAAGATGTCACAATCCTGTTAACATTAATTGGTGTCTGCAACTTCATTGGGCGTCTTGGCGGGGGCGTTCTCTCAGAATACTATGTTAGGCAAAAGGCCTTTCCTCGGACGGTTTGGATGACAGCTACACAGGCTCTTATGATAGGGGTCTTTCTCTTCTTTGCCTCAGGTCTTCCTGGATCTATTCATATCTCTTCGTCCGTACTAGGAATTTGTTATGGAGTACAGTTCTCGGTTATGGTTCCAACGGCTTCGGAGCTCTTCGGGTTGAAGCACTTTGGCATAATTTACAATTTTCTGACAATAGGGAATCCACTGGGAGCTTTCCTCTTTTCTGGTCTCCTTGCTGGATACATATACGATAAAGAAGCTCAAAGGCAGGGTGGCCATTCTTATCGAACGATCATGGGTGACACCAATGTTGACTGTTTAGGACCTAACTGCTTCAGGCTTACCTTTCTTATCATGGCAGGGGTGTGTGCTTTTGGGGTTCTAATGAGCATTATTCTTACAATCCGGATAAGGCCAGTTTATGAGACACTGTATGGCAGGAGTTCCTTCTGCATTCAGAAAACAATGGATACAGAAGAATTAACCTTGGAGAAGGGATCAAAAGCTTAA___CATTGGTACACCCTTTTAAAGTCTAGTAAGTGTTCAGAAACCCTGTTGCTGTTCTTGATTTCAAGGTAACTCACTGTGCTGTTCTTGATTTCAATGTAACTCAGTTGATTAGTAACCCGAAATATATCTTTTAGTTCGGGGTGGAGAATGAAGTTTGTATAATTGTTAATATATTGTGTTTGAAAGAAAGGTTTAGGGTTTTTATCGGCTCAAGGAATCTAGCATCTTGAGTGTTGATTTTTGCAGAATTGTAACTGCCAGTTTCTATTTACTGTAAAGTTTTTACGGCATCCTGTTTAGTTTGATGCGAGTACACAGTTTCAAGGGACAGAATCGTGTACTGTCCAAAGCATAACCAGTTGCTATCCAAGTTCTGTAAGTTGCCCGTTAGATGATACCACTTCAAAGAGACATTATGATAAGTTCGGGCGAAAGACCAGGACAGTCTCCAGGATTTAAATTATGTTTAATATTTTCTTCTCCAGTTATACCTTATTCTGTAATATACGTTGTAAAAGAAGTTGACAAAGCGCTCGAATGAGAACCTGATGTTAGTGAGTACCTTGGGTAAGCCCCAGTTTGGTTTTTGGGTAAAAAGTGCCCTCTAAGCATAAGCGTGTTCGAATTCGAATTCTAGGTTGTGTTTGTTTATTTCATTAATCAAAATATATTAATTAGC

Fln Alignment:

Contig16842___PWLGFAAAVWIQIASGNAYNFPLYSHKMKGVLKYSQGQLNNLGVANDVGENVGLLAGFICNKIPPWGILIIGSAASFFGYGLIWLVLSERISPLPYWAMWLALCLAANSATWFNTAVLVTNMxxxxQSRGTVAGILKGIAGLSAAVFTEIFTGFLSESSKNLVAFPGSGxxxxxxxxxMYFIRPCTPASGEDAEEHRYFVFIQAISITLALYLLSISIANYFLSLERYPISKXXXXXXXXXXXXXXXXXXXXXXRALKEDSEYIRKFLGLQMDPCREPLLGKEEKGPDLKPSADKKTAEFLYISNPVSNMSKDNSSELQRRLEGLPLTRSSSSLKYT-AFPEG-EDLNLGILLAEGEGAIRKKRRPRRGEDFKLLQALVKADFWLLXXXXXXXXXXXXXXLNNLAQIGLAEGYQDVTILLTLIGVCNFIGRLGGGVLSEYYVRQKAFPRTVWMTATQALMIGVFLFFASGLPGSIHISSSVLGICYGVQFSVMVPTASELFGLKHFGIIYNFLTIGNPXXXXXXXXXXXXYIYDKEAQRQGGHSYRTIMGDTNVDCLGPNCFRLTFLIMAGVCAFGVLMSIILTIRIRPVYETLYGRSSFCIQKT
B9N6Z0_______________PWVGLGAAVWVQIASGNAYNFPLYSHSLKSVLGFNQHQLTMLGVANDVGENVGLIPGIACNKFPPWVILLIGALSCFFGYGVLWLALSSKVQSLPYWLLCLALCVATNSSAWLSTAVLVTNMxxxxLSRGTVAGVLKGYGGISAAVFTEIYSTLLRNSSSKLLMFLALGxxxxxxxxxMYFVRACTPASGEDSSEHAHFLFTQGALIVLGLYVLTTTILNHIFHFSA-PVSNTILVI-----------------------------MVVLLMAPFAIPIKMTFHRMRVSKPEMHHQPVE-----TPDSVIQEDNADKTE------PLLKSSSSTTALGSFRENVEASEVAMLLAEGEGAVKKKRRPKRGEDFRFTEALIKADFWLLFFVYFVGVGSGVTVLNNLAQIGIAQGVHDTTILLSLFSFCNFVGRLGGGIVSEHFVRSKTIPRTIWMTCTQVMMIITYLLFASAIDGILYAATALLGICYGVQFSIMIPTVSELFGLKHFGLFYNFMSLGNPLGAFLFSGLLAGYVYDNEAAKQ---QVPNLLSNSSISCLGPNCFRLTFLVLAGACGLGSILSIILTMRIRPVYEMLYAGGSFRLPQT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
169		33		66	0.997452
1995	66		33		0.997452
1996	66			33	0.997452
1997		33	66		0.997452
2000	66		33		0.997452
2004		66	33		0.997452
2005	66		33		0.997452
2010	33		66		0.997452
2013		33	66		0.997452
2014	33			66	0.997452
2153	78	7	14		0.999974
2396	10			90	0.90298
2399			10	90	0.90298
2401	90	10			0.90298
2402	90		10		0.90298
2505		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain