SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16814

Length: 981 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16814

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SHR5-receptor-like kinase [Saccharum hybrid cultivar SP70-1143]	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Chromosome chr10 scaffold_81, whole genome shotgun sequence	-	-	1.028e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	9.376e-12	-

Source	Gene names
Sma3	AT1G07650; AT1G29750; AT1G53420; AT1G53430; AT1G53440; AT1G56145; AT3G14840; At1g16670; At1g29730; At1g29750; At1g56145; B1153E06.9; F14G9.24; F19K19.4; F1N18.19; F1N18.20; F1N18.21; F1N18.22; F24B9.29; GSVIVT00004365001; GSVIVT00018818001; GSVIVT00021495

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14840.2	-	60%
RefSeq	Arabidopsis thaliana	NP_001117479.1	Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002336440.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 63 aas, putative chimeric sequence, your sequence is shorter than subject: 276 - 402

Fln protein: VYKGVLADGKFVAVKKLSSRSNQGKREFLNEVATISAVQHRNLVKLYGCCVEEEERILVYEYLENNSLGRALFGPVECRLQLDWPIRFNICLEVARGLAYLHEESRIRIVHRDIKPNNILLDEHLNPKIADFGLARLYDAEKSHISTRVAGTIGYLAPEYALRGRLSEKVDIFSFGVVALEVVSNRCHEDRSLPDDMVYLLDWTWRLYEENRLLDLVDTKMISSCSEEEALRVIQVALLCTQAYSLTTAFHVSIGFHAIRCYRNSSSTVSAWIYH*

Protein Length: 277

Fln nts: AGTTTACAAGGGCGTGCTCGCAGATGGAAAGTTTGTGGCAGTAAAGAAGCTGTCATCCAGATCCAATCAAGGAAAACGAGAATTTCTTAATGAGGTGGCTACAATATCTGCTGTACAGCACCGAAACCTAGTGAAATTGTATGGTTGTTGTGTCGAGGAAGAAGAACGCATCTTGGTCTACGAATATTTGGAAAACAACAGTCTGGGTCGAGCTTTATTTGGTCCTGTTGAGTGTAGGCTCCAGCTTGATTGGCCTATCCGGTTTAACATTTGCCTTGAAGTTGCACGCGGACTGGCATATCTTCATGAAGAATCTAGAATTAGAATTGTGCATCGAGACATCAAACCTAATAACATCCTTCTAGACGAACATCTAAATCCAAAAATCGCTGATTTTGGGTTGGCCAGACTATATGACGCTGAAAAATCTCACATTAGCACCAGAGTGGCGGGAACAATTGGGTACCTAGCTCCAGAGTATGCTTTGCGTGGTCGCCTTTCAGAGAAAGTGGACATTTTCAGCTTTGGAGTAGTTGCTCTTGAAGTTGTTAGCAACAGATGTCATGAAGACAGGAGCTTGCCAGATGACATGGTCTATCTTCTGGATTGGACTTGGCGTCTGTACGAGGAAAACAGACTACTAGATTTGGTGGACACCAAAATGATTTCGAGCTGCTCTGAAGAAGAAGCTTTGAGGGTTATTCAAGTGGCTCTTTTATGTACACAAGCATACTCCCTCACAACGGCCTTCCATGTCTCAATTGGTTTCCATGCTATCAGGTGTTATAGAAATTCATCCTCCACCGTCTCGGCCTGGATATATCACTGA___TTGGCAGTTGTCTGAAGAGAATGCCAGGAATCCATCAACCAAGAACAATGGCAGGTCATGGAGCTGGGACATGAGCTTGACCTTGGAGAGGTCACAATAGCAAAAGAACATGATGTGAGAGCAGAGAAATCCTCCTGCTTCTTATCGTTCAC

Fln Alignment:

Contig16814___VYKGVLADGKFVAVKKLSSRSNQGKREFLNEVATISAVQHRNLVKLYGCCVEEEERILVYEYLENNSLGRALFGPVECRLQLDWPIRFNICLEVARGLAYLHEESRIRIVHRDIKPNNILLDEHLNPKIADFGLARLYDAEKSHISTRVAGTIGYLAPEYALRGRLSEKVDIFSFGVVALEVVSNRCHEDRSLPDDMVYLLDWTWRLYEENRLLDLVDTKMISSCSEEEALRVIQVALLCTQAYS
A9NWR4_______________VYKGTLKDGTVVAVKQLSAQSKQGVKEFLTEIATISDVQHENLVKLHGCCAEEEHRILVYEYLEKNSIAQALLD--NTRMDMDWTMRAKICMGTARGLSYLHEELVPHIVHRDIKASNVLLDRDLNPKIADFGLAKLFPDNVTHISTRVAGTIGYLAPEYAMRGQLTKKADIYSFGVLVLEIISGRSNTKSTFPLEEQFLLEWTWQLREESRLLDIVDPR-LEEYPKEEVLRFIKVALLCTQAAS

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
228	33			66	0.997452
230		33	66		0.997452
232		33	66		0.997452
233	33			66	0.997452
242	25	75			0.996473
257	75		25		0.996473
259		75		25	0.996473
262	25		75		0.996473
264	25			75	0.996473
295	20		80		0.995493
322	20			80	0.995493
324	20		80		0.995493
331	20		80		0.995493
472		16		83	0.994512
482	16		83		0.994512
485		16		83	0.994512
495	16		83		0.994512
500	16			83	0.994512
502	83			16	0.994512
510		16		83	0.994512
511	16		83		0.994512
515	83		16		0.994512
529	83		16		0.994512
536		20	80		0.995493
537		80		20	0.995493
692		33		66	0.997452
715			20	80	0.995493
717		20		80	0.995493
718			25	75	0.996473
725	75	25			0.996473
726		75		25	0.996473
727	75			25	0.996473
728	75		25		0.996473
731	75			25	0.996473
763	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain