SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16800

Length: 1934 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16800

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein SAR1A n=5 Tax=Embryophyta RepID=B4FPT6_MAIZE	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTPase superfamily, SAR1-type	IPR006687	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02080.1	ASAR1, ATSARA1C, ATSAR2, SAR2 secretion-associated RAS super family 2 chr4:921554-922547 FORWARD LENGTH=193	92%
RefSeq	Arabidopsis thaliana	NP_192117.1	GTP-binding protein SAR1A [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002316023.1	predicted protein [Populus trichocarpa]	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLN7

Fln msg:

Fln protein: MFLFDWFYSVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGIKWLSQYIK*

Protein Length: 195

Fln nts: GATAAGGTGAAAATAAATAAGAATGCTACACAAACTTATAATTTAGCTTCCCAAACATCCCAAAATAGCTTCACATAATCCAACTCTGAATAATTATTCCTTCTCATCCAAAAGAGATCAGCAGACAAAAAAGACAAACACGTGATTACTAGAAAGGTCAGAAATCAAAAAGAAGACGAACAAGACAGAAAATAAGATGGTTATTACAGCATGCAGTAGTAGTTCTCCTCATAGAAACATTTGATGCATTATGCACCTCTGGCAACTAGTTAGCTAGCACTTGAATGATCTAGCTTGACCAGTTCCACTAAACCCCATATTTTGTCCATTTTCTCTGCCTTGTGAAAGGCCTGACATTCGGTCATTCTTGTCTCCTCTCGCTTTTCTGATGCATCTGAATAGTTCTGCTTTTAAACAATGTTTAATAGATACATGCTTGTCCAAAAAGAGTCCAGTAAGAAGTTCGATTAACTAAACAAATAGCCAATTCAGTGCCCAAGATACCGACACATTTCAGCACATATCAAATTTTCCTTCTACCTCCTTTAATTGACGAAGAAGTCGTTTTCGGCTTTGAAATACTTAATTCCAGGTCTGGTATATCAGAAAGTTCATCGTTTTCTCGATTTCTTTGGACTTCGGCTTATTCGACACGGTGAAAAGTCAATTGGGTTATTTGCAGATTATTGTTTTGGATCTGATTTCCCATTTGGGTATCCTTGTCTCTACGGAGTCATTCGCAGGTTCTGCTTAAGAAACTTTTGGAAGGCTCGAAG_-_ATGTTTCTGTTCGATTGGTTTTACAGCGTTCTTGCCACTCTAGGCCTGTGGCAGAAAGAGGCCAAGATTCTATTTCTTGGCCTAGATAATGCAGGCAAGACCACCTTGTTGCATATGTTGAAAGATGAGAGGTTAGTCCAACATCAACCTACTCAGTATCCTACATCTGAGGAACTGAGTATTGGTAAAATCAAGTTTAAGGCCTTCGATCTTGGAGGTCATCAAATTGCTAGAAGAGTCTGGAAAGACTATTATGCCAAGGTGGATGCCGTGGTCTATTTGGTTGATGCGGCAGATAAAGAGAGATTTGCAGAGTCAAAAAAGGAGCTCGATGCCTTACTTTCAGATGACTCTTTGACAAATGTGCCTTTCTTGATTTTAGGAAACAAGATTGATATTCCATATGCAGCATCTGAAGATGAGCTGCGCTATTACCTAGGCCTATCAAATTATACAACTGGCAAGGGCAAAGTGAATTTGGCAGATTCTAATGTTAGACCGATTGAGGTCTTCATGTGCAGTATCGTTAGGAAAATGGGTTATGGTGAAGGTATTAAATGGCTCTCTCAGTACATTAAATAG___GTTCACAAATGAACCGAGGAATCACCTTTTTGTTGTAATTAGTCAAGGGCAGAACATTTAGTTTAGATTGTGTTCTTTTGAAATTGGTTAGTTTGGGGGCGGTATTTGTAATGAATGTTGAATAAGATGCGAAACGAATAGATCAGGACAGGAGAAATATGATTGCTGAGTCAAATTTAATTCAGAGTGCAGAGACTGTTAGTTATTCCTGACAATTTGAAAATTTCCTGGATATCATAATCATGAAATTGATTGTTTTAAACCCATCAGAAAGACTATTTTATATGCGTCAGATATCATAACATCTATGTCAGGACCTTGGATATCATCCCCATGTTACTGCAATACAGGGGTATCAAATTTTTTCTTGATTTTTAGTGAAACTCTGGTTCCGGTGTCATCAGTTTTCATTTTTATCTTCTAGGCTCTGGTACATTTTTATCTTCTAGGCTGTATTTATTTCTTATTCCAGTCAACAGTAAATGCAGCGGCATGGATATTGTGAAAGGGCATTCTATGTTCATACTCCTAATTATTAAGCTACTGTGCCTTAACGGTTGCTGGTCCTCGCTCAAT

Fln Alignment:

Contig16800___MFLFDWFYSVLATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRPIEVFMCSIVRKMGYGEGIKWLSQYIK
A9NLN7_______________MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAADKERFAESKKELDALLSDDSLTNVPFLILGNKIDIPYAASEDELRYYLGLSNYTTGKGKVNLADSNVRAIEVFMCSIVRKMGYGEGIKWLSQYIK

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
127	33	33			0.997753
128	33	66			0.997452
212	80		20		0.995493
485		85		14	0.993533
508	85		14		0.993533
533		14		85	0.993533
535		71		28	1.0
537			14	85	0.993533
538	14	14		71	0.984337
539		71	14		0.984337
544	14	85			0.993533
545			14	85	0.993533
548	14			85	0.993533
549	14			85	0.993533
550			14	85	0.993533
551	85		14		0.993533
554		16		83	0.994512
560	83	16			0.994512
614		12		87	0.992554
666	22		77		0.999999
716	10		90		0.90298
1043		10	90		0.90298
1046		10		90	0.90298
1543	3			95	0.999223
1714			88	11	0.999952
1721	84			15	0.999986
1734		28		71	1.0
1757		40	60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain