SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16764

Length: 545 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene16764
ATGGGATAATCGCGGAAGTTATAAGATTTGCATGGTGGAAGCCTCTGAAAATACAGAGGCACTTTGAATCACAGGGCATAGGAGGCCCTCCGTATAAGCTATTTCTTGGAAATGCCACAGAGATGGTGAAAATGGCGCATCAAGCGAGTTTCCAGACTATGGGATTTTCTCACGATATTCTAGCTCGAGTTCTGCCATTCTATCATCAATGGAGGAAGTCCTACGAGCCTCATCCTATTGTGAAGAAATTGGAAGGTGATGGACTCCCAAATTTGAAAGGCGAGAAGTGGACGCAACACAGAAGAATCATAAATCCTGCGTTTTCCTCAGAGAATTTGAGAGCATTGATTCCTGTGATTACCTGGAGTACCACGAATATGCTAAATAAATGGAAATGTTCCATTGAAGCGGGCGTGACTGAGATAGACATTTGTGAAGAGTTTGAGAATTTTAGTGCAGATGTCATTGCAAAAGCAGGTTTTGGCACCAACTACGAGGAAGGAAGATGCATATTTCGTATGCAGTCCGAGCAGTTAGTCTTTGCT

Ace file of the UniGene sp_v3.0_unigene16764 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PHYB activation tagged suppressor 1 protein [Arabidopsis thaliana] gb\|AAB95305.1\| putative cytochrome P450 [Arabidopsis thaliana] gb\|AAQ65187.1\| At2g26710 [Arabidopsis thaliana] dbj\|BAD42995.1\| putative cytochrome P450 [Arabidopsis thaliana] dbj\|BAF01580.	-	-	0.0	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Source	Gene names
Sma3	At2g26710; CYP734A; RCOM_0220560;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	steroid hydroxylase activity	GO:0008395	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	brassinosteroid homeostasis	GO:0010268	Biological Process	-
Sma3	brassinosteroid metabolic process	GO:0016131	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Distance to subject end: 284 aas, your sequence is shorter than subject: 181 - 517

Fln protein: GIIAEVIRFAWWKPLKIQRHFESQGIGGPPYKLFLGNATEMVKMAHQASFQTMGFSHDILARVLPFYHQWRKSYEPHPIVKKLEGDGLPNLKGEKWTQHRRIINPAFSSENLRALIPVITWSTTNMLNKWKCSIEAGVTEIDICEEFENFSADVIAKAGFGTNYEEGRCIFRMQSEQLVFA

Protein Length: 182

Fln nts: ATGGGATAATCGCGGAAGTTATAAGATTTGCATGGTGGAAGCCTCTGAAAATACAGAGGCACTTTGAATCACAGGGCATAGGAGGCCCTCCGTATAAGCTATTTCTTGGAAATGCCACAGAGATGGTGAAAATGGCGCATCAAGCGAGTTTCCAGACTATGGGATTTTCTCACGATATTCTAGCTCGAGTTCTGCCATTCTATCATCAATGGAGGAAGTCCTACGAGCCTCATCCTATTGTGAAGAAATTGGAAGGTGATGGACTCCCAAATTTGAAAGGCGAGAAGTGGACGCAACACAGAAGAATCATAAATCCTGCGTTTTCCTCAGAGAATTTGAGAGCATTGATTCCTGTGATTACCTGGAGTACCACGAATATGCTAAATAAATGGAAATGTTCCATTGAAGCGGGCGTGACTGAGATAGACATTTGTGAAGAGTTTGAGAATTTTAGTGCAGATGTCATTGCAAAAGCAGGTTTTGGCACCAACTACGAGGAAGGAAGATGCATATTTCGTATGCAGTCCGAGCAGTTAGTCTTTGCT

Fln Alignment:

Contig16764___IAEVIRFAWWKPLKIQRHFESQGIGGPPYKLFLGNATEMVKMAHQASFQTMGFSHDILARVLPFYHQWRKSY---------------EPH---------------------PIVKKLEGDGLPNLKGEKWTQHRRIINPAFSSENLRALIPVITWSTTNMLNKWKCSIEAGVTEIDICEEFENFSADVIAKAGFGTNYEEGRCIFRMQSEQLV
A9NWW9_______________VLRIVTVIWWKPLQVKKCFESQGVRGPPYRLLNGNFADMVRMNTQAKSTPIPWSHDIVPRVLPYYHHWTKTYGKDFIYWVGSKPRLNVPHPELIKEILSNKFGHYENISSNPLGRQLVGQGLVGLRGEKWVQHRRIINPAFHLDFLKGMVPTIVESTANMLEKWGKLVLSGAEEVEVLKEFCNLTADVISRTALGSSYAEAKHIFNLQDQQML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain