SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16757

Length: 1068 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16757

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carbonic anhydrase, putative n=1 Tax=Ricinus communis RepID=B9STU9_RICCO	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Carbonic anhydrase, putative	-	-	2.846e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carbonate dehydratase.	EC:4.2.1.1	-	7.246e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Nitrogen metabolism	00910		7.246e-23	%

Source	Gene names
Sma3	AT4g20990; AT4g21000; At1g08065; At1g08080; At2g28210; At4g21000; At5g04180; B1136H02.2; DB3L; DB3S; DIOA-1; F21E1_100; GSVIVT00000607001; GSVIVT00024565001; GSVIVT00025654001; GSVIVT00025655001; LYC_68t000002; NEC3; OSJNBa0056L09.10; OSJNBa0056L09.16; OS

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	monodehydroascorbate reductase (NADH) activity	GO:0016656	Molecular Function	-
Sma3	response to oxygen radical	GO:0000305	Biological Process	-
Sma3	one-carbon metabolic process	GO:0006730	Biological Process	-
Sma3	regulation of pH	GO:0006885	Biological Process	-
Sma3	response to carbon dioxide	GO:0010037	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Alpha carbonic anhydrase	IPR001148	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3		IPR017909	-	-
Sma3	Carbonic anhydrase, alpha-class, conserved site	IPR018338	-	-
Sma3		IPR018340	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08080.1	ATACA7, ACA7 alpha carbonic anhydrase 7 chr1:2517022-2518546 REVERSE LENGTH=275	52%
RefSeq	Arabidopsis thaliana	NP_172287.1	carbonic anhydrase [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002328312.1	predicted protein, partial [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP26

Fln msg: your sequence is longer than subject: 311 - 271

Fln protein: MGSDYQVSFSVWFLCYFVFYILPLVTQTFYCRAHWLLRFLTMARSVISVFIAFALILFIAGVRTQEVEDESEFEYEEGPKGPEHWGELKEEWKACGNGTHQSPIDVVKRHALISPDLGRLRRFYYTAKATLMNRGHDIMVNWSEGAGGVEIEGKRFTMRQSHWHSPAEHTIDGKKHPLEIHMLHQAQDGEIAVIGIIYKFGRPDTFLTELMDEINSISDMEPPEEPLGLVNPMHIKFGSRKYYRYAGSLTTPPCTEGVIWTVIHKVRTVSKDQVKALQEAVHDGYGKNARPRQSINGRIASKYIPKRRYA*

Protein Length: 312

Fln nts: _-_ATGGGAAGCGACTACCAGGTAAGCTTCAGTGTCTGGTTTTTATGTTATTTCGTTTTCTATATTTTGCCTCTCGTCACCCAAACCTTCTACTGTCGCGCCCATTGGTTGCTTCGCTTCCTTACTATGGCGCGATCTGTAATATCGGTATTCATTGCATTTGCCCTGATCCTCTTCATTGCCGGCGTTCGAACTCAGGAAGTTGAGGATGAGAGTGAGTTCGAGTACGAAGAGGGTCCCAAGGGGCCCGAGCACTGGGGGGAGCTCAAGGAGGAATGGAAGGCCTGCGGGAACGGGACGCATCAGTCTCCCATCGATGTAGTGAAGAGACATGCCTTAATCTCCCCGGACCTGGGCAGGCTCCGCAGATTCTATTACACTGCAAAAGCAACCCTTATGAACAGGGGTCACGACATCATGGTGAACTGGTCGGAAGGCGCCGGCGGTGTTGAGATAGAAGGGAAAAGATTCACAATGCGTCAAAGCCATTGGCACAGCCCGGCCGAGCACACTATTGATGGAAAAAAGCATCCTTTAGAAATCCATATGCTGCACCAAGCGCAGGACGGTGAAATTGCCGTGATTGGAATCATTTACAAGTTTGGCAGGCCTGACACTTTCTTGACAGAGTTAATGGATGAAATCAACTCGATTTCGGATATGGAACCGCCGGAGGAACCCCTGGGGCTGGTGAATCCGATGCACATAAAATTTGGTAGCAGGAAATATTACCGGTACGCGGGATCCCTCACCACTCCTCCTTGCACGGAGGGAGTCATCTGGACCGTGATTCACAAGGTAAGGACAGTCTCGAAAGACCAAGTGAAGGCTCTGCAAGAAGCTGTGCATGATGGTTATGGAAAGAATGCAAGACCTAGGCAATCAATAAATGGACGAATTGCTAGCAAGTACATACCAAAACGACGTTATGCTTGA___CTTCGTTAAATCTTTTGAAACGTCTTTAGACATATACTCCATTCCATTATTTTATGGATTCACCTATTCTCATTATACTTTATCTATTCTTTTATGAGATTCATAAAAATTCATGACAACGTATGTGCATTTTGT

Fln Alignment:

Contig16757___MARSVISVFIAFALILFIAGVRTQXXXXXXXXXXXXGPKGPEHWGELKEEWKACGNGTHQSPIDVVKRHALISPDLGRLRRFYYTAKATLMNRGHDIMVNWSEGAGGVEIEGKRFTMRQSHWHSPAEHTIDGKKHPLEIHMLHQAQDGEIAVIGIIYKFGRPDTFLTELMDEINSISDMEPPEEPLGLVNPMHIKFGSRKYYRYAGSLTTPPCTEGVIWTVIHKVRTVSKDQVKALQEAVHDGYGKNARPRQSINGRIASKY
A9NP26_______________MARSVIPAFIAFALILFIAGVRTQEIDDEREFEYKEGPKGPEHWGELKEEWKACGRGTQQSPIDVVKRNAIISPNLGTLHRIYHPANATLVNRGHDIMVNWSEGAGSVEIKGKRFTLKQCHWHTPAEHTIDGKQHPLEIHLVHQAVDGEIAVIGIIFEFGRPDTFLAELRDAIMAIAHMEPPVKPLGMVDPYDIKFDSRKYYRYMGSLTTPPCTEGVIWNVIDEVRTVSEDQVRALQEAVHDGYEKNARPIQPLNGRIVGLY

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
172			14	85	0.993533
173	14			85	0.993533
174		85	14		0.993533
176		14		85	0.993533
177		14		85	0.993533
178	14		85		0.993533
181	14		85		0.993533
183		85	14		0.993533
193	12	87			0.992554
195	12		87		0.992554
199		12	87		0.992554
200		12		87	0.992554
201	12			87	0.992554
226	12		87		0.992554
231	14		85		0.993533
243	16		83		0.994512
246		66		33	1.0
294		14	85		0.993533
318	85		14		0.993533
334			14	85	0.993533
342		83		16	0.994512
376	16	83			0.994512
395	16		83		0.994512
436	83	16			0.994512
442		14		85	0.993533
876		60	40		1.0
974		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain