SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16746

Length: 957 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16746

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative carbonic anhydrase [Arabidopsis thaliana]	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Carbonic anhydrase, putative	-	-	1.165e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Carbonate dehydratase.	EC:4.2.1.1	-	1.71e-25	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Nitrogen metabolism	00910		1.71e-25	%

Source	Gene names
Sma3	AT4g20990; AT4g21000; At1g08065; At1g08080; At2g28210; At4g21000; At5g04180; B1136H02.2; DB3L; DB3S; DIOA-1; F21E1_100; GSVIVT00000607001; GSVIVT00021604001; GSVIVT00024565001; GSVIVT00025654001; GSVIVT00025655001; NEC3; OSJNBa0056L09.10; OSJNBa0056L09.16

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	monodehydroascorbate reductase (NADH) activity	GO:0016656	Molecular Function	-
Sma3	response to oxygen radical	GO:0000305	Biological Process	-
Sma3	one-carbon metabolic process	GO:0006730	Biological Process	-
Sma3	regulation of pH	GO:0006885	Biological Process	-
Sma3	response to carbon dioxide	GO:0010037	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Alpha carbonic anhydrase	IPR001148	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3		IPR017909	-	-
Sma3	Carbonic anhydrase, alpha-class, conserved site	IPR018338	-	-
Sma3		IPR018340	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08080.1	ATACA7, ACA7 alpha carbonic anhydrase 7 chr1:2517022-2518546 REVERSE LENGTH=275	51%
RefSeq	Arabidopsis thaliana	NP_172287.1	carbonic anhydrase [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002328312.1	predicted protein, partial [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP26

Fln msg:

Fln protein: MEKKSSGLIILISILLIMVVKVHGADTELDFAYEGARGPSHWGDLKEEWRTCDKGKEQSPIDLVKKNIEIFPSLGKLQKSYRAANASLKNRGHDIMVRWAEGAGTIRIDGTSFTLVQCHWHSPAEHTINGRRYPLEIHMVHKSVDNQTVVIGILYKYGRHDTFLAELMNKMASLSHEMEPGAEEALGVIDPKHIKLGSRKYYRYVGSLTTPPCTEGVIWIIVKKVRTVSRDEVREIIGAIHDGYGKNARPTQPANGRSIEMYTPKSIPRHL*

Protein Length: 273

Fln nts: ATGGGGAATCAGAGCCATTCTTTTGCTTCTGCAATCAA_-_ATGGAGAAGAAATCCTCAGGGCTCATTATTCTCATCTCCATTCTGCTGATTATGGTTGTCAAAGTCCATGGAGCAGACACAGAGCTTGACTTTGCCTATGAAGGTGCAAGAGGCCCTTCACACTGGGGAGATCTTAAGGAGGAATGGAGAACCTGCGATAAGGGCAAAGAGCAGTCTCCCATCGATTTGGTGAAGAAGAATATAGAAATATTTCCGAGTTTAGGGAAGTTGCAGAAAAGCTATCGAGCAGCCAATGCATCACTCAAGAATAGAGGCCATGACATTATGGTGAGATGGGCAGAGGGAGCAGGAACAATACGCATAGATGGTACGAGCTTTACTCTGGTCCAATGCCATTGGCATTCTCCTGCTGAGCACACTATCAATGGTAGACGATATCCTTTGGAGATACATATGGTACATAAATCTGTTGACAACCAAACGGTTGTTATTGGGATATTATACAAATATGGAAGACATGATACTTTCCTTGCAGAGTTGATGAATAAAATGGCATCCCTCAGTCATGAGATGGAACCGGGGGCAGAGGAAGCTTTGGGTGTTATAGATCCCAAGCATATAAAGCTGGGAAGCAGAAAATACTACAGATATGTTGGATCTCTCACAACCCCACCATGTACAGAGGGTGTTATCTGGATCATTGTGAAGAAGGTGAGAACTGTATCAAGAGATGAAGTCAGAGAAATAATAGGGGCCATTCATGATGGTTATGGGAAAAATGCAAGACCGACCCAACCTGCCAACGGGCGAAGCATAGAAATGTACACCCCGAAGAGTATTCCGAGGCACCTTTGA___GCTTCTTGAGACAGAAAGGCTGTCCTCGTTAGGAGGACTTTGGGGCTCATTATATATTACTCTTTGAAGATGTACTGCTATTTGAAATAAAAGACATAATGAG

Fln Alignment:

Contig16746___VKVHGADTELDFAY-EGARGPSHWGDLKEEWRTCDKGKEQSPIDLVKKNIEIFPSLGKLQKSYRAANASLKNRGHDIMVRWAEGAGTIRIDGTSFTLVQCHWHSPAEHTINGRRYPLEIHMVHKSVDNQTVVIGILYKYGRHDTFLAELMNKMASLSHEMEPGAEEALGVIDPKHIKLGSRKYYRYVGSLTTPPCTEGVIWIIVKKVRTVSRDEVREIIGAIHDGYGKNARPTQPANGRSIEMY
A9NP26_______________VRTQEIDDEREFEYKEGPKGPEHWGELKEEWKACGRGTQQSPIDVVKRNAIISPNLGTLHRIYHPANATLVNRGHDIMVNWSEGAGSVEIKGKRFTLKQCHWHTPAEHTIDGKQHPLEIHLVHQAVDGEIAVIGIIFEFGRPDTFLAELRDAIMAIAH-MEPPV-KPLGMVDPYDIKFDSRKYYRYMGSLTTPPCTEGVIWNVIDEVRTVSEDQVRALQEAVHDGYEKNARPIQPLNGRIVGLY

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
137		33		66	0.997452
197	33			66	0.997452
200			66	33	0.997452
340	83		16		0.994512
358			88	11	0.923564
376	11			88	0.923564
377		11		88	0.923564
379		88		11	0.923564
515	75		25		1.0
571	20			80	0.995493
573	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain