SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16744

Length: 1019 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16744

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lactoylglutathione lyase, putative n=1 Tax=Ricinus communis RepID=B9RV37_RICCO	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Lactoylglutathione lyase, putative	-	-	9.831e-19	-

Source	Gene names
Sma3	AT1G15380; AT1G80160; At1g15380; At1g80160; At2g28420; CHLREDRAFT_104003; F18B13.24; F9L1.33; GSVIVT00000378001; GSVIVT00000379001; GSVIVT00016866001; GSVIVT00028685001; GSVIVT00035399001; GSVIVT00036822001; Glyoxalase_TA3B63B13-1; MtrDRAFT_AC148340g32v2;

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	0.0	-
Sma3	lyase activity	GO:0016829	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein chr1:30151101-30151930 FORWARD LENGTH=167	67%
RefSeq	Arabidopsis thaliana	NP_565231.1	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002298106.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
104		25		75	0.996473
116	75		25		0.996473
188		50	50		1.0
189		50	50		1.0
303	80	20			0.995493
304		20		80	0.995493
318		40		60	1.0
396	28		71		1.0
443	80		20		0.999996
473			87	12	0.992554
482		12	87		0.992554
488	25		75		1.0
495	12	87			0.992554
510			12	87	0.992554
560		33	66		1.0
612	33	66			0.997452
623		66		33	0.997452
626		66		33	0.997452
655	85		14		0.993533
663	50	50			1.0
664		16		83	0.994512
690	40		60		1.0
700			40	60	1.0
739		20		80	0.995493
741	40		60		1.0
760			33	66	1.0
770			62	25	1.0
775	50	50			1.0
779			12	87	0.992554
820			16	83	0.994512
830		16		83	0.994512
892	50			50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
817	829	TGT TGT TGT TGT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain