SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16743

Length: 762 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16743

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SV06_RICCO	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	UDP-glucosyltransferase, putative	-	-	2.116e-28	-

Source	ECs	Term	Type	e value	Identity
Sma3	Indole-3-acetate beta-glucosyltransferase.	EC:2.4.1.121	-	2.77e-37	-
Sma3		EC:2.4.1.21-	-	9.442e-09	-

Source	Gene names
Sma3	AT4g15550; AdGt-7; At1g05530; At1g05560; At1g05670; At1g05680; At1g24100; At1g78270; At2g31750; At2g31790; At2g43820; At2g43820/F18O19.7; At2g43840; CtGT11; CtGT12A; CtGT12B; DcA82; EPGT-1; EPGT-2; Eg5GT-A; Eg5GT-B; F3F20.12; F3F20.13; F3I6.2; GLT2; GSVIV

Source	GOs	Term	Type	Identity
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	-
Sma3	indole-3-acetate beta-glucosyltransferase activity	GO:0047215	Molecular Function	-
Sma3	thiohydroximate beta-D-glucosyltransferase activity	GO:0047251	Molecular Function	-
Sma3	limonoid glucosyltransferase activity	GO:0050645	Molecular Function	-
Sma3	UDP-glucose:4-aminobenzoate acylglucosyltransferase activity	GO:0080002	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	-
Sma3	glucosinolate biosynthetic process	GO:0019761	Biological Process	-
Sma3	para-aminobenzoic acid metabolic process	GO:0046482	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G05680.1	UGT74E2 Uridine diphosphate glycosyltransferase 74E2 chr1:1703196-1704639 REVERSE LENGTH=453	49%
RefSeq	Arabidopsis thaliana	NP_172059.1	Uridine diphosphate glycosyltransferase 74E2 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002331798.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLP2

Fln msg: Overlapping hits, possible frame ERROR between 227 and 197, STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 253 - 437

Fln protein: NCMKSLAPIRTVGPVIPSAFLDGRNPEDTDPGAHLWKTMNCMDWLNTKEPASVVYVSFGSLAVLxxxxxxxxxxxxKASGYSFLWVVRPPSSKGEISSEENLPAGFLNETSGQGLVVPWCHQLQVLSHASVGAFMTHCGWNSTLESLSLGVPMLVIPQWSDQTTNSAYVAKKWMAGMRLKERSENGLVGREEVEKCIKMVMESQLGAELRKNALRWKKLSREAMVKGGSSDRNIQEFVDEVVARAWSSSLSGQ

Protein Length: 254

Fln nts: TAAATTGTATGAAATCGCTAGCTCCGATTCGCACTGTCGGTCCTGTCATACCCTCGGCTTTCTTGGACGGACGGAATCCCGAAGATACAGACCCTGGGGCACACTTGTGGAAAACCATGAACTGCATGGATTGGCTGAATACGAAGGAACCCGCAAGCGTCGTGTATGTTTCTTTCGGAAGCCTGGCTGTTCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGGCCAGTGGATATTCTTTCCTGTGGGTTGTTCGTCCACCTTCTTCCAAAGGGGAAATTAGTAGTGAAGAGAACTTGCCTGCGGGCTTTCTGAACGAAACCTCTGGGCAAGGCCTAGTCGTTCCATGGTGTCATCAGCTGCAAGTTCTTTCTCATGCGTCTGTCGGTGCTTTTATGACACACTGTGGATGGAATTCGACACTGGAAAGCCTTAGCCTCGGGGTCCCTATGTTGGTTATTCCTCAGTGGAGCGATCAAACAACTAATTCCGCATACGTTGCAAAGAAATGGATGGCGGGAATGAGATTGAAGGAACGATCAGAAAATGGGCTTGTAGGGAGAGAGGAAGTGGAGAAGTGCATAAAAATGGTTATGGAAAGCCAACTCGGTGCTGAGCTGAGGAAAAATGCTTTACGGTGGAAGAAATTATCGAGGGAGGCAATGGTGAAAGGCGGTTCTTCCGATCGAAATATTCAAGAATTTGTAGATGAGGTTGTTGCCAGAGCATGGTCGTCTTCGTTGTCTGGACAAGA

Fln Alignment:

Contig16743___NCMKSLAPIRTVGPVIPSAFLDGRNPEDTDPGAHLWKTMNCMDWLNTKEPASVVYVSFGSLAVLSxxxxxxxxxxLKASGYSFLWVVRPPSSKGEISSEENLPAGFLNETSGQGLVVPWCHQLQVLSHASVGAFMTHCGWNSTLESLSLGVPMLVIPQWSDQTTNSAYVAKKWMAGMRLKERSENGLVGREEVEKCIKMVMESQLGAELRKNALRWKKLSREAMVKGGSSDRNIQEFVDEVVARAWSSSLSG
B8LLP2_______________NSMESIFPIRTVGPLIPSSFLDGRNPEDTDFGASMWKTTNCMDWLNTKEPASVVYVSFGSLAVLSxxxxxxxxxxLKASGYSFLWVIRPPSSKGETNREETLPAGFLNETSEQGLVVPWCHQLQVLSHASVGAFMTHCGWNSTLESLSLGIPMLAVPQWSDQPTNSAYIEEKWKAGIRLNKRSANGLVGKEEVEKCIKIVMESQLGTELRKNALRWKKLSREAMVKGGSSDKNIEEFVEDIIGRAWPSSLSG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
428			90	10	0.90298
443		10		90	0.90298
466		10		90	0.90298
488	88		11		0.923564
513	88		11		0.923564
530	88	11			0.923564
534	88	11			0.923564
543		12	87		0.992554
587	16		83		0.994512
589	20		80		0.995493
593	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain