SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene16714

Length: 806 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene16714

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis thaliana] sp\|Q67ZE1.2\|HSDD2_ARATH RecName: Full=3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Short=At3BETAHSD/D2; AltName: Full=4alpha-carboxysterol-C3-dehydrogenase/C4	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	3-beta-hydroxysteroid dehydrogenase	-	-	7.95e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.17-	-	1.849e-19	-

Source	Gene names
Sma3	3BETAHSD/D1; 3BETAHSD/D2; 3BETAHSD/D3; At1g47290; At2g26260; At2g43420; GSVIVT00010299001; GSVIVT00032305001; LOC_Os03g29150; LOC_Os03g29170; OSJNBb0034B12.13; OSJNBb0074M06.10; Os03g0404800; Os03g0405000; Os09g0516500; OsI_11972; OsI_32045; OsJ_11204; Os

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	3-beta-hydroxy-delta5-steroid dehydrogenase activity	GO:0003854	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-
Sma3	sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	GO:0047012	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	steroid biosynthetic process	GO:0006694	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	Reticulon	IPR003388	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Spen paralogue and orthologue SPOC, C-terminal	IPR012921	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Hydroxyacylglutathione hydrolase	IPR017782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G26260.1	AT3BETAHSD/D2, 3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 chr2:11178237-11182872 FORWARD LENGTH=564	57%
RefSeq	Arabidopsis thaliana	NP_001031422.1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002308509.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUL5

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 268 - 540

Fln protein: DGVHDIINGVESLPYPDKHDDIYSEMKAEAEAMVLQSNGREGLLTCALRPSSIFGPGDKCLVPLIIATARAGNFKFIIGNGENMNDFTYVENVAHAHISAEQVLDSAKHDAAGKAYFITNMEPMKFWEFSSLILEGLGYERPYIHVPVNLVMPIAWVVELALKKLASYGMAVPWSTRSTIRLLSCTRTFNCSRAQKYINYSPVVSLKEGIRLTLESFQHLRSGVVGVMCEDFDQPSKVYKFLGGGRVADILLWRDEKHTFTILVALVV

Protein Length: 269

Fln nts: TGACGGTGTTCATGATATAATTAATGGGGTTGAATCCTTGCCATATCCTGACAAGCATGATGATATCTATTCAGAGATGAAGGCAGAGGCAGAGGCAATGGTTTTGCAATCTAATGGCAGAGAAGGGTTGCTAACATGTGCTTTACGCCCAAGCAGTATATTTGGTCCCGGGGACAAATGTCTTGTCCCATTGATAATAGCAACAGCAAGAGCAGGAAATTTTAAGTTCATTATTGGGAATGGAGAGAACATGAACGACTTCACTTACGTTGAAAATGTTGCTCATGCCCATATATCTGCGGAGCAAGTACTAGATTCTGCAAAGCATGATGCGGCAGGGAAGGCTTATTTCATAACCAATATGGAGCCCATGAAATTCTGGGAATTCTCGTCGTTGATACTAGAAGGATTGGGATACGAAAGGCCCTACATCCACGTTCCCGTGAACCTGGTGATGCCCATTGCTTGGGTGGTTGAATTGGCATTAAAAAAGCTGGCTTCATATGGGATGGCAGTGCCCTGGTCCACACGTTCGACGATCAGATTGCTTTCTTGTACAAGAACTTTCAATTGTTCAAGAGCCCAAAAGTATATAAATTATTCGCCTGTAGTATCTCTCAAGGAAGGTATTAGGTTGACACTTGAGTCTTTCCAACATTTAAGATCTGGAGTGGTTGGTGTAATGTGTGAAGACTTTGATCAACCATCCAAGGTTTACAAATTTCTCGGAGGTGGAAGAGTTGCTGATATACTCCTGTGGAGAGATGAGAAGCACACATTTACCATATTGGTGGCACTGGTAGTCG

Fln Alignment:

Contig16714___DGVHDIINGVESLPYPDKHDDIYSEMKAEAEAMVLQSNGREGLLTCALRPSSIFGPGDKCLVPLIIATARAGNFKFIIGNGENMNDFTYVENVAHAHISAEQVLDS----AKHDAAGKAYFITNMEPMKFWEFSSLILEGLGYERPYIHVPVNLVMPIAWVVELALKKLASYGMAVPWSTRSTIRLLSCTRTFNCSRAQKYINYSPVVSLKEGIRLTLESFQHLRSGVVGVMCEDFDQPSKVYKFLGGGRVADILLWRDEKHTFTILVALV
A9NUL5_______________DGVHGIYNGDEALRYPDKHNDIYSETKAEAEALVLRSNGREGLLTCAIRPSSIFGPGDKLLVPSLVAAARAGKSKFIIGDGENIYDFTYVENVAHAHICAEQALNSNMADGKDAAAGKAYFITNMEPIKFWEFMSLLLEGLGYQRPKIHIPVKVVMPIAYMVEWIYKKLAPYGMSVPQLTPSRIRLLSCTRTFNCSRAQKLLGYTPLVALEEGINLTIESYSHLRAEIPMIKNRNFDQPSKAYKMIGNERVANILLWRDEKQTFTIMLALI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
656		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain